| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ahpC [C]
Identifier: 91788241
GI number: 91788241
Start: 2468333
End: 2468983
Strand: Direct
Name: ahpC [C]
Synonym: Bpro_2374
Alternate gene names: 91788241
Gene position: 2468333-2468983 (Clockwise)
Preceding gene: 91788240
Following gene: 91788242
Centisome position: 47.47
GC content: 60.22
Gene sequence:
>651_bases ATGGCAACTCTCAGACTCGGCGACATCGCCCCTGACTTCACACAAGACTCCACGGAAGGGAAGATTTCCTTTCACGCGTG GGCGGGCGACTCCTGGGTTGTGCTGTTTTCCCATCCCGCTGACTTCACGCCGGTATGCACCACCGAACTGGGCAAAACCG CCGCTCTGAGCCGCGAATTTGCCAAACGCCATGTCAAACCCATCGCCATCAGCGTGGACCCGCTGGAGTCGCATGGCAAG TGGGTGCATGACATCAACGAAACGCAAAACACCACGGTGAACTTCCCCATCCTGGCCGATGCCGACCGCAAGGTGGCCAA CCTGTACGACATGATTCACCCGAACGCCTTGAGCACCGGCCCCACGGCCACGGTGCGCAGCGTGTTCATCATCGACCCGA AAAAGGTGATTCGCACCACCTTCACGTACCCCGCCAGCACCGGCCGCAATTTCGACGAGATCCTGCGCGTCATTGACTCG CTGCAGCTGACCGACGGCTACAAGGTGGCCACGCCCGTGAACTGGAAAGACGGCGACGATGTGATCATCGTGCCCAGCCT GCAGGATCCGGCCGAGCTGGCCCAGCGTTTTCCCAAGGGATTCAAGGCCGTCAAGCCTTACCTGCGCATCACACCGCAGC CCAACAAGTAA
Upstream 100 bases:
>100_bases TGTGTAAATGAAGATAATTTAAGAGAAATATATTCTTTTGAGTTTTAAGGTCCGGTCCCCACAATGCCTTTCGACAACAC AAATTGCAAAGGACCAGACC
Downstream 100 bases:
>100_bases ATGGCCCCCACGCTTTTCGCTTTGCGTAATGCGCTGCCCCCCGAGGGGGCCGCTGCGCCTGCGGCCCGGCAAAGCCGGTT CCGCGGCCCCGGCTTGCAAA
Product: 1-Cys peroxiredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MATLRLGDIAPDFTQDSTEGKISFHAWAGDSWVVLFSHPADFTPVCTTELGKTAALSREFAKRHVKPIAISVDPLESHGK WVHDINETQNTTVNFPILADADRKVANLYDMIHPNALSTGPTATVRSVFIIDPKKVIRTTFTYPASTGRNFDEILRVIDS LQLTDGYKVATPVNWKDGDDVIIVPSLQDPAELAQRFPKGFKAVKPYLRITPQPNK
Sequences:
>Translated_216_residues MATLRLGDIAPDFTQDSTEGKISFHAWAGDSWVVLFSHPADFTPVCTTELGKTAALSREFAKRHVKPIAISVDPLESHGK WVHDINETQNTTVNFPILADADRKVANLYDMIHPNALSTGPTATVRSVFIIDPKKVIRTTFTYPASTGRNFDEILRVIDS LQLTDGYKVATPVNWKDGDDVIIVPSLQDPAELAQRFPKGFKAVKPYLRITPQPNK >Mature_215_residues ATLRLGDIAPDFTQDSTEGKISFHAWAGDSWVVLFSHPADFTPVCTTELGKTAALSREFAKRHVKPIAISVDPLESHGKW VHDINETQNTTVNFPILADADRKVANLYDMIHPNALSTGPTATVRSVFIIDPKKVIRTTFTYPASTGRNFDEILRVIDSL QLTDGYKVATPVNWKDGDDVIIVPSLQDPAELAQRFPKGFKAVKPYLRITPQPNK
Specific function: Directly Reduces Organic Hydroperoxides In Its Reduced Dithiol Form. [C]
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI4758638, Length=222, Percent_Identity=51.3513513513513, Blast_Score=213, Evalue=1e-55, Organism=Homo sapiens, GI32189392, Length=193, Percent_Identity=32.6424870466321, Blast_Score=94, Evalue=8e-20, Organism=Homo sapiens, GI4505591, Length=194, Percent_Identity=31.4432989690722, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI32455266, Length=194, Percent_Identity=31.4432989690722, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI32455264, Length=194, Percent_Identity=31.4432989690722, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI5453549, Length=169, Percent_Identity=29.585798816568, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI32483377, Length=189, Percent_Identity=29.1005291005291, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI5802974, Length=169, Percent_Identity=30.1775147928994, Blast_Score=75, Evalue=3e-14, Organism=Escherichia coli, GI1786822, Length=178, Percent_Identity=29.2134831460674, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25153706, Length=222, Percent_Identity=42.3423423423423, Blast_Score=168, Evalue=1e-42, Organism=Caenorhabditis elegans, GI193204376, Length=201, Percent_Identity=28.8557213930348, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI32565831, Length=201, Percent_Identity=28.8557213930348, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17554494, Length=169, Percent_Identity=28.9940828402367, Blast_Score=82, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6319407, Length=212, Percent_Identity=54.2452830188679, Blast_Score=218, Evalue=5e-58, Organism=Saccharomyces cerevisiae, GI6323613, Length=188, Percent_Identity=30.3191489361702, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6320661, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581278, Length=218, Percent_Identity=49.0825688073394, Blast_Score=216, Evalue=8e-57, Organism=Drosophila melanogaster, GI24652436, Length=206, Percent_Identity=51.4563106796116, Blast_Score=190, Evalue=5e-49, Organism=Drosophila melanogaster, GI24652434, Length=206, Percent_Identity=50.9708737864078, Blast_Score=190, Evalue=7e-49, Organism=Drosophila melanogaster, GI17975518, Length=206, Percent_Identity=50.9708737864078, Blast_Score=189, Evalue=1e-48, Organism=Drosophila melanogaster, GI17738015, Length=180, Percent_Identity=29.4444444444444, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI17157991, Length=167, Percent_Identity=31.7365269461078, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24641739, Length=167, Percent_Identity=31.7365269461078, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI21357347, Length=182, Percent_Identity=30.2197802197802, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24656348, Length=180, Percent_Identity=30, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI17864676, Length=180, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2250 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 6040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1580 Molecules/Cell In: Stationary-Phase
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR019479 - InterPro: IPR022915 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF10417 1-cysPrx_C; PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 23955; Mature: 23824
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATLRLGDIAPDFTQDSTEGKISFHAWAGDSWVVLFSHPADFTPVCTTELGKTAALSREF CCEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHH AKRHVKPIAISVDPLESHGKWVHDINETQNTTVNFPILADADRKVANLYDMIHPNALSTG HHHCCCEEEEEECCCHHCCCEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCC PTATVRSVFIIDPKKVIRTTFTYPASTGRNFDEILRVIDSLQLTDGYKVATPVNWKDGDD CCCEEEEEEEECCHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCC VIIVPSLQDPAELAQRFPKGFKAVKPYLRITPQPNK EEEEECCCCHHHHHHHCCCHHHHHCCEEEECCCCCC >Mature Secondary Structure ATLRLGDIAPDFTQDSTEGKISFHAWAGDSWVVLFSHPADFTPVCTTELGKTAALSREF CEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHH AKRHVKPIAISVDPLESHGKWVHDINETQNTTVNFPILADADRKVANLYDMIHPNALSTG HHHCCCEEEEEECCCHHCCCEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCC PTATVRSVFIIDPKKVIRTTFTYPASTGRNFDEILRVIDSLQLTDGYKVATPVNWKDGDD CCCEEEEEEEECCHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCC VIIVPSLQDPAELAQRFPKGFKAVKPYLRITPQPNK EEEEECCCCHHHHHHHCCCHHHHHCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]