| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rho [H]
Identifier: 91788133
GI number: 91788133
Start: 2349672
End: 2350934
Strand: Reverse
Name: rho [H]
Synonym: Bpro_2262
Alternate gene names: 91788133
Gene position: 2350934-2349672 (Counterclockwise)
Preceding gene: 91788134
Following gene: 91788132
Centisome position: 45.21
GC content: 59.78
Gene sequence:
>1263_bases ATGCACTTAAACGAACTCAAGGCACTGCACGTGTCTGAAGTCCTCAAGCAGGCCGAAGCCCTGGAGATCGAAAACGTTGG CCGCATGCGCAAGCAGGAGCTGATGTTTGCCATCATCAAGAAGCGGGCAAAAACCGGCGAAACCATCGTCGCCGATGGCG TGCTGGAAGTGCTGCCGGACGGTTTTGGCTTTCTGCGTGCGCCCGACTCGAGCTACACCGCCAGCACCGACGACATCTAC ATCAGCCCAAGCCAGATCCGCCGCTTCAACCTGCACACCGGCGACATGATCGAAGGCGAAGTGCGCACCCCCAAAGACGG CGAGCGCTACTTTGCACTGAACAAGCTCGACAAAGTCAACGACGGTGCGCCGGAAGACAACAAGCACAAGGTCATGTTCG AGAACCTGACGCCGCTGTTCCCGCGCGAGCAGTTCAAGCTCGAGCGCGACATCAAGGCCGAGGAAAACCTGACCAGCCGC ATCATCGACATCATTGCCCCCATCGGCAAAGGCCAGCGCGCCCTGCTGGTGGCGCCCCCCAAATCCGGCAAGACGGTGAT GATGCAGAACATCGCCCACGCCATCACGGCCAACTATCCCGAAGTGGTGATGATGGTCCTGCTGGTGGACGAACGCCCTG AAGAGGTCACCGAGATGCAGCGCAGCGTGCGCGGCGAGGTGATTTCCTCCACCTTCGACGAACCCGCAGCGCGCCACGTG CATGTGGCCGAAATGGTGATCGAGCGCGCCAAGCGCCTGGTCGAACTCGGCAAGGACGTCGTGATCCTGCTGGACTCCAT CACCCGCCTCGCCCGTGCCTACAACAACGTGCTGCCCTCGTCAGGCAAGGTGCTGACCGGCGGTGTCGACGCCAATGCAC TGCAGCGCCCCAAGCGTTTCTTTGGTGCGGCCCGCAAGATCGAAGAAGGCGGCAGCCTGACCATCATTGGCACAGCGCTG GTCGATACCGGCAGCCGCATGGACGAAGTGATTTTTGAGGAGTTCAAGGGCACCGGCAACTGCGAGATTCACCTGGATCG CCGCCTCTACGAAAAACGCGTGTTCCCGGCCATCCACCTCAACCGCAGCGGCACCCGCAAGGAAGAGCTGCTGCTGGCGC CCGAAATCCTGCAAAAGTCGCGCATTTTGCGTCAATTCATGTACAACATGGACGAAATCGAGTCCATGGAGCTCATGCTC AAGAACATGAAAGCGACGAAAAACAACCACGAATTCTTCGACATGATGCGGCGAGGCGGCTAG
Upstream 100 bases:
>100_bases ACCGGCTGGTTCGAGTTCCCGGTTTGTAAGCCTTCCCTCTCTGCGGCTTCTTTTCAAACCTCCCCCGTTTTTTTAAATGA ACTCCGCAAGGAGTAATTCC
Downstream 100 bases:
>100_bases AAATAGAGCCCCCACGGTCGCTCACTTCGTGTAGCTCCCTGCCCCCCCGAGGGGGCCGCTGCGCCTGCGGCCCGGCTAAG CCGGTTCCGCGGCCCCGGCT
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPDGFGFLRAPDSSYTASTDDIY ISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVNDGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSR IIDIIAPIGKGQRALLVAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPAARHV HVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRFFGAARKIEEGGSLTIIGTAL VDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIHLNRSGTRKEELLLAPEILQKSRILRQFMYNMDEIESMELML KNMKATKNNHEFFDMMRRGG
Sequences:
>Translated_420_residues MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPDGFGFLRAPDSSYTASTDDIY ISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVNDGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSR IIDIIAPIGKGQRALLVAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPAARHV HVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRFFGAARKIEEGGSLTIIGTAL VDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIHLNRSGTRKEELLLAPEILQKSRILRQFMYNMDEIESMELML KNMKATKNNHEFFDMMRRGG >Mature_420_residues MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPDGFGFLRAPDSSYTASTDDIY ISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVNDGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSR IIDIIAPIGKGQRALLVAPPKSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPAARHV HVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRFFGAARKIEEGGSLTIIGTAL VDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIHLNRSGTRKEELLLAPEILQKSRILRQFMYNMDEIESMELML KNMKATKNNHEFFDMMRRGG
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=418, Percent_Identity=65.311004784689, Blast_Score=576, Evalue=1e-165,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 47502; Mature: 47502
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHCCC GFGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVN CCCEEECCCCCCCCCCCCEEECHHHHHEEECCCCCEECCCCCCCCCCCCEEEEHHHHHCC DGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSRIIDIIAPIGKGQRALLVAPP CCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC KSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPAARHV CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH HVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRF HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHH FGAARKIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIHL HHHHHHHCCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCEEEE NRSGTRKEELLLAPEILQKSRILRQFMYNMDEIESMELMLKNMKATKNNHEFFDMMRRGG CCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKTGETIVADGVLEVLPD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHCCC GFGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVN CCCEEECCCCCCCCCCCCEEECHHHHHEEECCCCCEECCCCCCCCCCCCEEEEHHHHHCC DGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSRIIDIIAPIGKGQRALLVAPP CCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC KSGKTVMMQNIAHAITANYPEVVMMVLLVDERPEEVTEMQRSVRGEVISSTFDEPAARHV CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH HVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRF HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHH FGAARKIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIHL HHHHHHHCCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCEEEE NRSGTRKEELLLAPEILQKSRILRQFMYNMDEIESMELMLKNMKATKNNHEFFDMMRRGG CCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14500782 [H]