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The map label for this gene is ygiD [H]

Identifier: 91788047

GI number: 91788047

Start: 2269075

End: 2269929

Strand: Direct

Name: ygiD [H]

Synonym: Bpro_2174

Alternate gene names: 91788047

Gene position: 2269075-2269929 (Clockwise)

Preceding gene: 91788042

Following gene: 91788049

Centisome position: 43.63

GC content: 63.98

Gene sequence:

>855_bases
ATGCTCCCCATCCCTGATGCCGCCACGCTGGACCGGCTCGCGTCCCTGAAGAAATCAGAAAGAATGCCGGTGCTTTTTCT
CGGCCATGGCAGTCCCATGAACGCGCTTGGCGACAACGAATACCGGCGCAGCTGGCAGGTGCTGGGCGCCGAATTTGGAT
CGAAACTGCCCCGTCCGCAGCTGATTTTGTGCATTTCCGCGCACTGGCTGACCGAGGGCTGGTGGCTAACGGCCATGGCC
CAGCCCAAGACCATCCATGACTTTGGCGGTTTTCCGCAGGAACTCTTTGACCAGCAATACCCGGCGCCAGGCGACCCCGC
AGCGGCGCAGGCGCTCAGCCTGCTGGTGCGGCAGCGCGCCTCGGAACCGCTGGGGCTGGACGTGGGTGAATGGGGGCTGG
ACCACGGTAGCTGGTCTGTGCTCAAGCCCATGTTTCTGGGAGCGGACATCCCGGTCATCCAGCTCAGCATGGATTACAGC
CGGGCACCCGACGAACACTATGCGCTGGCGCGACAACTCAAGGCCCTGCGCGACCGGGGCGTGCTGATTGTGGGCAGCGG
CAACATCGTGCATAACCTGCGCCAGATGCAGCGGGGGGCCACTGGCAGCCAGGCCTACGATTGGGCCCTGGAATTCGACC
AGACGATTGGCGGCTACCTGCAGCAGGGCAACCTCGCCGCCTTGCCTGGCTTCCAGAAACTCGGACAGGTGGCCAAAATG
GCCCACCCGACCCACGAGCACTATCTGCCGCTGCTATACGCGGCAGGCGCTGTCGAGGCCCGGGAGCCGATGCGGTTTTT
CAACACCAGCTTTCAGGGCGGCTCGATCTCGATGCGTTCGGTGGTCTGGGGCTAG

Upstream 100 bases:

>100_bases
CGCCCGCAGGCGACAAGTCCCTGTTTGCAAGGCTTAATATCTGGGCTCAGCAGTGAGCCAGTTCGGGCCGATGCCGTAAC
CCCCCTCGCAGGAGAAGCCC

Downstream 100 bases:

>100_bases
GGCCTGGGCGGCGCCAGTCTTACATCACCTTCGCGATGGAGGCGCAGACGTAGTCGATGTTTTTGCTGTTCAGCGCCGCC
ACGCACATGCGGCCGGTGTC

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MLPIPDAATLDRLASLKKSERMPVLFLGHGSPMNALGDNEYRRSWQVLGAEFGSKLPRPQLILCISAHWLTEGWWLTAMA
QPKTIHDFGGFPQELFDQQYPAPGDPAAAQALSLLVRQRASEPLGLDVGEWGLDHGSWSVLKPMFLGADIPVIQLSMDYS
RAPDEHYALARQLKALRDRGVLIVGSGNIVHNLRQMQRGATGSQAYDWALEFDQTIGGYLQQGNLAALPGFQKLGQVAKM
AHPTHEHYLPLLYAAGAVEAREPMRFFNTSFQGGSISMRSVVWG

Sequences:

>Translated_284_residues
MLPIPDAATLDRLASLKKSERMPVLFLGHGSPMNALGDNEYRRSWQVLGAEFGSKLPRPQLILCISAHWLTEGWWLTAMA
QPKTIHDFGGFPQELFDQQYPAPGDPAAAQALSLLVRQRASEPLGLDVGEWGLDHGSWSVLKPMFLGADIPVIQLSMDYS
RAPDEHYALARQLKALRDRGVLIVGSGNIVHNLRQMQRGATGSQAYDWALEFDQTIGGYLQQGNLAALPGFQKLGQVAKM
AHPTHEHYLPLLYAAGAVEAREPMRFFNTSFQGGSISMRSVVWG
>Mature_284_residues
MLPIPDAATLDRLASLKKSERMPVLFLGHGSPMNALGDNEYRRSWQVLGAEFGSKLPRPQLILCISAHWLTEGWWLTAMA
QPKTIHDFGGFPQELFDQQYPAPGDPAAAQALSLLVRQRASEPLGLDVGEWGLDHGSWSVLKPMFLGADIPVIQLSMDYS
RAPDEHYALARQLKALRDRGVLIVGSGNIVHNLRQMQRGATGSQAYDWALEFDQTIGGYLQQGNLAALPGFQKLGQVAKM
AHPTHEHYLPLLYAAGAVEAREPMRFFNTSFQGGSISMRSVVWG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=266, Percent_Identity=50, Blast_Score=243, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 31331; Mature: 31331

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPIPDAATLDRLASLKKSERMPVLFLGHGSPMNALGDNEYRRSWQVLGAEFGSKLPRPQ
CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LILCISAHWLTEGWWLTAMAQPKTIHDFGGFPQELFDQQYPAPGDPAAAQALSLLVRQRA
EEEEEEHHHHCCCEEEEEECCCCEEHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHC
SEPLGLDVGEWGLDHGSWSVLKPMFLGADIPVIQLSMDYSRAPDEHYALARQLKALRDRG
CCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
VLIVGSGNIVHNLRQMQRGATGSQAYDWALEFDQTIGGYLQQGNLAALPGFQKLGQVAKM
EEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
AHPTHEHYLPLLYAAGAVEAREPMRFFNTSFQGGSISMRSVVWG
CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEHHCCCCC
>Mature Secondary Structure
MLPIPDAATLDRLASLKKSERMPVLFLGHGSPMNALGDNEYRRSWQVLGAEFGSKLPRPQ
CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LILCISAHWLTEGWWLTAMAQPKTIHDFGGFPQELFDQQYPAPGDPAAAQALSLLVRQRA
EEEEEEHHHHCCCEEEEEECCCCEEHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHC
SEPLGLDVGEWGLDHGSWSVLKPMFLGADIPVIQLSMDYSRAPDEHYALARQLKALRDRG
CCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
VLIVGSGNIVHNLRQMQRGATGSQAYDWALEFDQTIGGYLQQGNLAALPGFQKLGQVAKM
EEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
AHPTHEHYLPLLYAAGAVEAREPMRFFNTSFQGGSISMRSVVWG
CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]