| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pht3 [H]
Identifier: 91788006
GI number: 91788006
Start: 2223956
End: 2225410
Strand: Reverse
Name: pht3 [H]
Synonym: Bpro_2133
Alternate gene names: 91788006
Gene position: 2225410-2223956 (Counterclockwise)
Preceding gene: 91788008
Following gene: 91788005
Centisome position: 42.79
GC content: 64.88
Gene sequence:
>1455_bases ATGAATGCAGAACAAAACGAACTGATCACCCGGATCGGCCCGGGCACTCCCTGCGGGCAGCTGATGCGCCAGTATTGGCA ACCGGTGGCGCTGGTCGACGAATTCAACCCCAGCCAGGACCCGCGCATGGACAAGCGCCCGGTCAAGGCGGTGCGCGTGC TGGGCCAGGACCTGGTGCTGTTCAGTGACGCCAGCAACACCTGGGGCCTGCTGGACCGCGACTGTCCGCACCGCGGGGCC GACCTGTCATTTGGCCGGCGCGAGAGCCTTGAACAGGGTGGTGGCCTGCGCTGCCCGTTTCACGGCTGGAAGTTTGCAGC TGATGGCCGCTGCCTGGAGACGCCGGCCGAGCCCACGGGCAGCAAGCTGTGCGAACGCATCAGACAGCGCAGCTACCCGG TGATCGAAAAAAGCGGCGTGCTGTTTGCCTGGCTGGGTGACGAGGGCAGCACACCCCCGCCCTTCCCGGCGTTTGACTGC TTTGCCGCACCGGCCACCCACAGCTTTGCCTTCAAGGGCCTGTGGAACGCCAACTGGCTGCAGGCCTTTGAAGTAGGCAT TGACCCGGCGCATCCCTCCTTCCTGCACCGTTTTCTGCAGGACGAGCCGCTGGACGAGATCGGCCAGAACGCAGCGGGCA AACAGTTCCGCAGTGCGAGCGCCGGCGCCATGGATGGCGAGCAATGGCCGATGACGCGCATCATGCGCGAATTTGCGCAG CCCGACATCAGCTTTGAAACCAGACCGTGGGGCATGCAGCTCACCGCGTTGCGGCCCATGACCGACAAGCTGACCCATGT GCGCGTGACCCAGGCCATCTTCCCGGCCACCTTTGTGATTCCGCTGTCGGAAACCATGACGATCACGCAGATGCACCTGC CCGTGGACGACACGCATACCTACTGGTATTCCTTCTTCACCAGCTTTGCCGGGCCGCTGGACAAGGAGAGCATGCGCGCG CAGCGCCAGCAGTTCATCTCGCTACCCGACTACATCCCCAAGGCCGGCAGCCATAACCGGTGGGGCTTTGATGCCGAGGA ACAGTTGAGCCAGACCTATCTGGGCATGGGCGAGGACGATATCAACGTGCATGACCAGTGGGCCGTGGAAAGCATGGGCC CGATTGCCGACCGCACGCGCGAGCACCTGGGCACCACCGACAAGGTCATCATGGTCAACCGGCGGGTGCTGATCAAGGCC ATCGCCACGGTGCAGGCCGGCGGTGTTGCGCCGGGTATCGCCGACGCAGCACAGGCCGCAGCCATGACCGGGCCGGACAC GGTGGACGGCATTGCACCAGCCGGTGCGTGGCCCGACTGGTGGCGCGAGCAGGTGCGGACCAAGCGTGACGGTGCGCCTT GGACGGGCAGCCCTCACCCCAACCCTCTCCCAGAGGGAGAGGGAGCCAAGATTCCTGCTTTCATTCCCTCTCCCTCTGGG AGCAGGCTGGGGTGA
Upstream 100 bases:
>100_bases GTTTCTTGCAAGCTCATGATGATGACTGTACACTGAATTCAAATTTCGGTATACCGTTTTCACACCCCCCACCTGATCAC CCCCATCCCGCAGGACATCC
Downstream 100 bases:
>100_bases GGGCCGTGCCCACCTTCGCGCAGCTCTGCGGAATCCGCGATGCCGCACGCCAGCAAGCGCTGGAACACACCTCCGGGCTG ATCACTGCCAGCGACCTGGA
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MNAEQNELITRIGPGTPCGQLMRQYWQPVALVDEFNPSQDPRMDKRPVKAVRVLGQDLVLFSDASNTWGLLDRDCPHRGA DLSFGRRESLEQGGGLRCPFHGWKFAADGRCLETPAEPTGSKLCERIRQRSYPVIEKSGVLFAWLGDEGSTPPPFPAFDC FAAPATHSFAFKGLWNANWLQAFEVGIDPAHPSFLHRFLQDEPLDEIGQNAAGKQFRSASAGAMDGEQWPMTRIMREFAQ PDISFETRPWGMQLTALRPMTDKLTHVRVTQAIFPATFVIPLSETMTITQMHLPVDDTHTYWYSFFTSFAGPLDKESMRA QRQQFISLPDYIPKAGSHNRWGFDAEEQLSQTYLGMGEDDINVHDQWAVESMGPIADRTREHLGTTDKVIMVNRRVLIKA IATVQAGGVAPGIADAAQAAAMTGPDTVDGIAPAGAWPDWWREQVRTKRDGAPWTGSPHPNPLPEGEGAKIPAFIPSPSG SRLG
Sequences:
>Translated_484_residues MNAEQNELITRIGPGTPCGQLMRQYWQPVALVDEFNPSQDPRMDKRPVKAVRVLGQDLVLFSDASNTWGLLDRDCPHRGA DLSFGRRESLEQGGGLRCPFHGWKFAADGRCLETPAEPTGSKLCERIRQRSYPVIEKSGVLFAWLGDEGSTPPPFPAFDC FAAPATHSFAFKGLWNANWLQAFEVGIDPAHPSFLHRFLQDEPLDEIGQNAAGKQFRSASAGAMDGEQWPMTRIMREFAQ PDISFETRPWGMQLTALRPMTDKLTHVRVTQAIFPATFVIPLSETMTITQMHLPVDDTHTYWYSFFTSFAGPLDKESMRA QRQQFISLPDYIPKAGSHNRWGFDAEEQLSQTYLGMGEDDINVHDQWAVESMGPIADRTREHLGTTDKVIMVNRRVLIKA IATVQAGGVAPGIADAAQAAAMTGPDTVDGIAPAGAWPDWWREQVRTKRDGAPWTGSPHPNPLPEGEGAKIPAFIPSPSG SRLG >Mature_484_residues MNAEQNELITRIGPGTPCGQLMRQYWQPVALVDEFNPSQDPRMDKRPVKAVRVLGQDLVLFSDASNTWGLLDRDCPHRGA DLSFGRRESLEQGGGLRCPFHGWKFAADGRCLETPAEPTGSKLCERIRQRSYPVIEKSGVLFAWLGDEGSTPPPFPAFDC FAAPATHSFAFKGLWNANWLQAFEVGIDPAHPSFLHRFLQDEPLDEIGQNAAGKQFRSASAGAMDGEQWPMTRIMREFAQ PDISFETRPWGMQLTALRPMTDKLTHVRVTQAIFPATFVIPLSETMTITQMHLPVDDTHTYWYSFFTSFAGPLDKESMRA QRQQFISLPDYIPKAGSHNRWGFDAEEQLSQTYLGMGEDDINVHDQWAVESMGPIADRTREHLGTTDKVIMVNRRVLIKA IATVQAGGVAPGIADAAQAAAMTGPDTVDGIAPAGAWPDWWREQVRTKRDGAPWTGSPHPNPLPEGEGAKIPAFIPSPSG SRLG
Specific function: Unknown
COG id: COG4638
COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71983709, Length=171, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017941 - InterPro: IPR015881 [H]
Pfam domain/function: PF00355 Rieske [H]
EC number: =1.14.12.7 [H]
Molecular weight: Translated: 53609; Mature: 53609
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAEQNELITRIGPGTPCGQLMRQYWQPVALVDEFNPSQDPRMDKRPVKAVRVLGQDLVL CCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEHHCCCCCCCCCCCHHHHHHHHHHCCCEEE FSDASNTWGLLDRDCPHRGADLSFGRRESLEQGGGLRCPFHGWKFAADGRCLETPAEPTG EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCEECCCCCEECCCCCCCH SKLCERIRQRSYPVIEKSGVLFAWLGDEGSTPPPFPAFDCFAAPATHSFAFKGLWNANWL HHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCEECCCCCCHHH QAFEVGIDPAHPSFLHRFLQDEPLDEIGQNAAGKQFRSASAGAMDGEQWPMTRIMREFAQ HHHHCCCCCCCHHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCC PDISFETRPWGMQLTALRPMTDKLTHVRVTQAIFPATFVIPLSETMTITQMHLPVDDTHT CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEECCCCCCHH YWYSFFTSFAGPLDKESMRAQRQQFISLPDYIPKAGSHNRWGFDAEEQLSQTYLGMGEDD HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC INVHDQWAVESMGPIADRTREHLGTTDKVIMVNRRVLIKAIATVQAGGVAPGIADAAQAA CCCCHHHHHHHCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH AMTGPDTVDGIAPAGAWPDWWREQVRTKRDGAPWTGSPHPNPLPEGEGAKIPAFIPSPSG HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC SRLG CCCC >Mature Secondary Structure MNAEQNELITRIGPGTPCGQLMRQYWQPVALVDEFNPSQDPRMDKRPVKAVRVLGQDLVL CCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEHHCCCCCCCCCCCHHHHHHHHHHCCCEEE FSDASNTWGLLDRDCPHRGADLSFGRRESLEQGGGLRCPFHGWKFAADGRCLETPAEPTG EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCEECCCCCEECCCCCCCH SKLCERIRQRSYPVIEKSGVLFAWLGDEGSTPPPFPAFDCFAAPATHSFAFKGLWNANWL HHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCEECCCCCCHHH QAFEVGIDPAHPSFLHRFLQDEPLDEIGQNAAGKQFRSASAGAMDGEQWPMTRIMREFAQ HHHHCCCCCCCHHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCC PDISFETRPWGMQLTALRPMTDKLTHVRVTQAIFPATFVIPLSETMTITQMHLPVDDTHT CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEECCCCCCHH YWYSFFTSFAGPLDKESMRAQRQQFISLPDYIPKAGSHNRWGFDAEEQLSQTYLGMGEDD HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC INVHDQWAVESMGPIADRTREHLGTTDKVIMVNRRVLIKAIATVQAGGVAPGIADAAQAA CCCCHHHHHHHCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH AMTGPDTVDGIAPAGAWPDWWREQVRTKRDGAPWTGSPHPNPLPEGEGAKIPAFIPSPSG HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC SRLG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA