| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiC [H]
Identifier: 91787985
GI number: 91787985
Start: 2202011
End: 2202991
Strand: Direct
Name: gsiC [H]
Synonym: Bpro_2112
Alternate gene names: 91787985
Gene position: 2202011-2202991 (Clockwise)
Preceding gene: 91787982
Following gene: 91787986
Centisome position: 42.34
GC content: 60.45
Gene sequence:
>981_bases ATGCTTGCTTTTATTTTGCGCCGCCTGATTCAGGCCGTGATCGTGATGATCGTGGTTGCCTTTATTGCCTTCATGCTGTT TCAGTATGTGGGCGATCCCGTGGTGTTCCTGCTGGGGCAGGATGCAACGCCCGCGCAAATCAAGCAGCTGCGCACCGATC TGGGACTCGACCAGTCGTTCTTCGTGCAGTTCTGGCATTTCCTGCTCAATGCCGCACGAGGCGAATTTGGCCTGAGCCTG CGCCAGGGTGCGAAGGTGTCGCGACTGATTTCCGAACGCTTTCCCGCCACGCTGGAACTTGCGCTGGTCGCAGCCCTCAT GGCGCTGCTGATCGGCATCCCCATGGGTGTTTATTCGGCGCTGCGCCGCGGCTCGTTCCTGAGCCAGATGTTCATGACGA TCTCGCTGCTCGGCGTCTCGCTGCCGACCTTCCTGATCGGCATCCTGCTGATCCTGGTGTTTTCCGTGGGCCTGGGCTGG TTCCCGAGCTTCGGCCGCGGCGAGACGGTGCAACTCGGCTGGTGGAGCACCGGCCTGGCCAAGGCCGATGGCTGGCATCA CGTCGTGTTGCCGGCCGTGACGCTGGCGATCTTCCAGCTCACGCTGATCATGCGGCTGGTGCGCGCCGAGATGCTCGAAG TGCTGCGCACCGATTACATCAAGTTTGCCCGCGCTCGGGGTCTTTCCAATCGGGCCATTCACTTTGGCCATGCACTCAAA AACACGCTGGTGCCGGTGATGACCATTACCGGCTTGCAACTGGGCGGCCTGATCGCTTTCGCCATCATCACCGAGACCGT GTTCCAGTGGCCCGGCATGGGCCTGCTGTTCATCCAGGCCGTGACCTTTGCCGACATTCCGGTGATGGCGGCCTATCTGT GTCTGATTGCGCTGATTTTTGTGCTCATCAACCTGGTCGTTGATCTCTTGTATTTTGTGGTGGACCCCAGGCTGCGCGTT GGCCATGCTGGGGGCCACTGA
Upstream 100 bases:
>100_bases CGCTTGGGTGAGGTGCTTTTTTTCTTTAACCCTAAAGTAAACCCTTGTGTCGGCACGGCACTTGCTCTGCTAGTATCCAC CGGAACTTTTCTATTGACTG
Downstream 100 bases:
>100_bases TGCTGGCCTGCCACTGAATCATTGAGCCGACAATTTTTACCCACCCCAAGCCCTCATCTCTTCCATAAGGAGTTCCCGAT GAAATTCAAGCCAAACCTGC
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MLAFILRRLIQAVIVMIVVAFIAFMLFQYVGDPVVFLLGQDATPAQIKQLRTDLGLDQSFFVQFWHFLLNAARGEFGLSL RQGAKVSRLISERFPATLELALVAALMALLIGIPMGVYSALRRGSFLSQMFMTISLLGVSLPTFLIGILLILVFSVGLGW FPSFGRGETVQLGWWSTGLAKADGWHHVVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHALK NTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALIFVLINLVVDLLYFVVDPRLRV GHAGGH
Sequences:
>Translated_326_residues MLAFILRRLIQAVIVMIVVAFIAFMLFQYVGDPVVFLLGQDATPAQIKQLRTDLGLDQSFFVQFWHFLLNAARGEFGLSL RQGAKVSRLISERFPATLELALVAALMALLIGIPMGVYSALRRGSFLSQMFMTISLLGVSLPTFLIGILLILVFSVGLGW FPSFGRGETVQLGWWSTGLAKADGWHHVVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHALK NTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALIFVLINLVVDLLYFVVDPRLRV GHAGGH >Mature_326_residues MLAFILRRLIQAVIVMIVVAFIAFMLFQYVGDPVVFLLGQDATPAQIKQLRTDLGLDQSFFVQFWHFLLNAARGEFGLSL RQGAKVSRLISERFPATLELALVAALMALLIGIPMGVYSALRRGSFLSQMFMTISLLGVSLPTFLIGILLILVFSVGLGW FPSFGRGETVQLGWWSTGLAKADGWHHVVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHALK NTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALIFVLINLVVDLLYFVVDPRLRV GHAGGH
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=37.5, Blast_Score=231, Evalue=4e-62, Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=37.5, Blast_Score=218, Evalue=4e-58, Organism=Escherichia coli, GI1789888, Length=330, Percent_Identity=34.8484848484849, Blast_Score=197, Evalue=7e-52, Organism=Escherichia coli, GI1787761, Length=334, Percent_Identity=38.0239520958084, Blast_Score=169, Evalue=3e-43, Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=30.1242236024845, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=33.5820895522388, Blast_Score=150, Evalue=9e-38, Organism=Escherichia coli, GI1788504, Length=287, Percent_Identity=29.2682926829268, Blast_Score=116, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 35987; Mature: 35987
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAFILRRLIQAVIVMIVVAFIAFMLFQYVGDPVVFLLGQDATPAQIKQLRTDLGLDQSF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCHHH FVQFWHFLLNAARGEFGLSLRQGAKVSRLISERFPATLELALVAALMALLIGIPMGVYSA HHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH LRRGSFLSQMFMTISLLGVSLPTFLIGILLILVFSVGLGWFPSFGRGETVQLGWWSTGLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC KADGWHHVVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHALK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VLINLVVDLLYFVVDPRLRVGHAGGH HHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLAFILRRLIQAVIVMIVVAFIAFMLFQYVGDPVVFLLGQDATPAQIKQLRTDLGLDQSF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCHHH FVQFWHFLLNAARGEFGLSLRQGAKVSRLISERFPATLELALVAALMALLIGIPMGVYSA HHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH LRRGSFLSQMFMTISLLGVSLPTFLIGILLILVFSVGLGWFPSFGRGETVQLGWWSTGLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC KADGWHHVVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHALK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VLINLVVDLLYFVVDPRLRVGHAGGH HHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]