| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pheT [H]
Identifier: 91787980
GI number: 91787980
Start: 2195672
End: 2198098
Strand: Direct
Name: pheT [H]
Synonym: Bpro_2107
Alternate gene names: 91787980
Gene position: 2195672-2198098 (Clockwise)
Preceding gene: 91787979
Following gene: 91787981
Centisome position: 42.22
GC content: 63.25
Gene sequence:
>2427_bases ATGCAATTCCCAGAATCCTGGTTGCGCGAATTCTGCAATCCGCCGCTCAATACCCAGCAGCTCGCTGAAACCCTGACCAT GGCCGGTCTTGAAGTTGAAGAGCTCAAGCCGGTGGCGCCGCCTTTCACCAAAATCGTCGTGGGTGAAATCAGGGAAGCCG CCCAGCATCCCAACGCGGACCGCCTTCGCATCTGCCAGGTGGATGTGGGCCAGGGCAGCCTGCTCACTATCGTCTGCGGT GCGCCCAATGCCCGTGTGGGCATCAAGGTGCCATGCGCGCTGGTCGGTGCTGAATTGCCGCCCGGCGAAGACGGCAAGCC TTTCCTGATCAAAGTCGGCACACTGCGTGGCGTGGAAAGCCAGGGCATGCTGTGCTCGGCGCGCGAACTCAAGCTTTCGG AAGACCATGGCGGTTTGCTCGAGCTGGCCGCAGATGCGCCCCTGGGTCAGGACATCCGCGAGCACCTGCAACTCGATGAC ACGTTGTTCACCCTCAAGCTCACGCCCAATCTGGCACATTGCCTGAGCGTCTACGGCGTCGCGCGTGAAGTCGCTGCCTT GACGGGTGCGCCCCTCAAGGCGCCGGCTTTTCCCGCTGTGCCGGTAGCCGATGCGACCCAATTACCCGTCAAAATCAGTG CGCCGGATTTGTGTGGCCGCTTCTCGGGCCGCGTGGTGCGTAACGTCAATACCCAGGCTGCCACTCCGTCATGGATGGTG GACCGCCTGGCGCGTTGCGGCCAGCGCAGCGTGACGGCATTGGTGGATATTTCCAACTATGTGATGTTCGAGCTGGGCCG TCCCTCGCATATTTTTGACCTCGACAAGATCCATGGCGGGCTTGACGTCCGCTGGGGCAAAGCCGGCGAGACGCTGAAGC TGCTCAATGGCAACACGGTGACGGTGGACGAGAAGGTCGGCGTGATTGCCGATGACGTACAGGTCGAATCCCTGGCCGGC ATCATGGGCGGCGATGCGACCGCCGTGTCGGACGACACGAAGCATGTGTATGTCGAGGCCGCCTTCTGGTGGCCCAAGGC CATCGCCGGCCGTTCACGCCGCTACAACTTTTCCACCGATGCCGGCCACCGCTTTGAACGCGGTGTGGACCCGGGCTGCA CCGTGGAGCACATCGAACGCATCAGCCAGCTGATCATCGACATTTGCGGCACGCCCGAGACGGTGTGCGGCCCCATGAAC GATGCGCAGGTCAACCTGCCCCAGCCCACGCCCGTGACCATGCGCGTGGCGCGCGCGGCCAAGGTGATTGGTATGCCGCT CACGCAGGCGCAATGCCTGGATGTGCTTCAACGCCTGGGCCTGCCGGTGGCGCAAGGCGAGGGTACGCTGACGGTGACAC CGCCCAGCTATCGCTTCGATCTGCAGATCGAGGAAGACCTCATTGAAGAGGTGGTGCGCATGGTGGGCTACAACGAGTTG CCCGAGACGCCGCCGCTGGCGCCCATCACGGCCCGGATCCGGCCGGAAGCCGAACGCAGCCCGTTTGCCGTGCGCCGCGC GCTGGCTTCGCTGGGCTATCAGGAGACGATCAATTTCAGCTTTGTGGAAGAGCGCTGGGAGCATGAGCTGGCCGGCAACC CCAACCCCATCAAGCTGCTCAATCCCATTGCCAGCCAGATGAGCGTGATGCGCTCCTCGCTGCTGGGCTCCCTGCTGCAG GTCCTCAAGTTCAACCTGGACCGCAAGGCTCCCCGGGTGAATGTTTTTGAGCTGGGTCGGGTGTTTCTGCGCGATGCGCA AAGCCTGAACACCGACACGACGGTGGCCGGCTTCCACCAGCCCATGCGTGTGGCAGGCCTGGCTTATGGCCCGCGCGCCG CGCTGCATTGGGGCCAGCCGGACAAGGCGGCGGACTTCTTCGACGTCAAGGGTGATGTCGAGGCCTTGCTGGCGCCATTG CAGGCTGTTTTTGTACCCGCAACCCACCCCGCCATGCACCCTGGCCGTTGTGCCAGCGTGTCGGTGGCGGGCCGGCATAT CGGCTTCGTCGGAGAACTTCATCCGCAGTGGCGGCAAGGTTATGAAGTGGCCCAGGCGCCCCTGTTGTTTGAGCTGGAGC TCGACACCGTACTGCTGCGCCAGGTGCCTTCGTTCACACCGGTCAGCAAGCTGCAGCCCGTCGAGCGCGACATCGCCGTG ATCGTTCAGGAAAGCGTCACGCATGCGGCGCTCATGGCGGCCGTTCATGGTGCCGACACGCGAGGCTTGCTCAAGGGTGC TACGCTGTTTGATGTCTATCGGCCGCAGCAGGCCAGTGCCGGCATGCTGCTGGGCGAGAAGAGCCTTGCTGTGCGCTTGG TGCTTTCCAGCGATGCCGCTACACTGACCGATGACGATATTGAAGCAGCCGTCCAGGCAGTGCTTGCCAATCTGCAGCAA CAACTGCAGGCCCGTCTTCGTGCTTGA
Upstream 100 bases:
>100_bases GCGCTACGGTGTGAATGACCTGCGCCTGTTCTTTGACGGCGACATCCGCTTCCTGTCCCAGTTCCAGTCATAACAACAAG AAAAAGAACAAGGTAAGACC
Downstream 100 bases:
>100_bases AGCGCGCATGCAGCCGCCACAAAAACAATAGCCGACTGGAGGATCGCCTCATGGAATTTTCTGTTGAAAGTCTGGAAACC CCAGCGCTGACCAAAGCGCA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MQFPESWLREFCNPPLNTQQLAETLTMAGLEVEELKPVAPPFTKIVVGEIREAAQHPNADRLRICQVDVGQGSLLTIVCG APNARVGIKVPCALVGAELPPGEDGKPFLIKVGTLRGVESQGMLCSARELKLSEDHGGLLELAADAPLGQDIREHLQLDD TLFTLKLTPNLAHCLSVYGVAREVAALTGAPLKAPAFPAVPVADATQLPVKISAPDLCGRFSGRVVRNVNTQAATPSWMV DRLARCGQRSVTALVDISNYVMFELGRPSHIFDLDKIHGGLDVRWGKAGETLKLLNGNTVTVDEKVGVIADDVQVESLAG IMGGDATAVSDDTKHVYVEAAFWWPKAIAGRSRRYNFSTDAGHRFERGVDPGCTVEHIERISQLIIDICGTPETVCGPMN DAQVNLPQPTPVTMRVARAAKVIGMPLTQAQCLDVLQRLGLPVAQGEGTLTVTPPSYRFDLQIEEDLIEEVVRMVGYNEL PETPPLAPITARIRPEAERSPFAVRRALASLGYQETINFSFVEERWEHELAGNPNPIKLLNPIASQMSVMRSSLLGSLLQ VLKFNLDRKAPRVNVFELGRVFLRDAQSLNTDTTVAGFHQPMRVAGLAYGPRAALHWGQPDKAADFFDVKGDVEALLAPL QAVFVPATHPAMHPGRCASVSVAGRHIGFVGELHPQWRQGYEVAQAPLLFELELDTVLLRQVPSFTPVSKLQPVERDIAV IVQESVTHAALMAAVHGADTRGLLKGATLFDVYRPQQASAGMLLGEKSLAVRLVLSSDAATLTDDDIEAAVQAVLANLQQ QLQARLRA
Sequences:
>Translated_808_residues MQFPESWLREFCNPPLNTQQLAETLTMAGLEVEELKPVAPPFTKIVVGEIREAAQHPNADRLRICQVDVGQGSLLTIVCG APNARVGIKVPCALVGAELPPGEDGKPFLIKVGTLRGVESQGMLCSARELKLSEDHGGLLELAADAPLGQDIREHLQLDD TLFTLKLTPNLAHCLSVYGVAREVAALTGAPLKAPAFPAVPVADATQLPVKISAPDLCGRFSGRVVRNVNTQAATPSWMV DRLARCGQRSVTALVDISNYVMFELGRPSHIFDLDKIHGGLDVRWGKAGETLKLLNGNTVTVDEKVGVIADDVQVESLAG IMGGDATAVSDDTKHVYVEAAFWWPKAIAGRSRRYNFSTDAGHRFERGVDPGCTVEHIERISQLIIDICGTPETVCGPMN DAQVNLPQPTPVTMRVARAAKVIGMPLTQAQCLDVLQRLGLPVAQGEGTLTVTPPSYRFDLQIEEDLIEEVVRMVGYNEL PETPPLAPITARIRPEAERSPFAVRRALASLGYQETINFSFVEERWEHELAGNPNPIKLLNPIASQMSVMRSSLLGSLLQ VLKFNLDRKAPRVNVFELGRVFLRDAQSLNTDTTVAGFHQPMRVAGLAYGPRAALHWGQPDKAADFFDVKGDVEALLAPL QAVFVPATHPAMHPGRCASVSVAGRHIGFVGELHPQWRQGYEVAQAPLLFELELDTVLLRQVPSFTPVSKLQPVERDIAV IVQESVTHAALMAAVHGADTRGLLKGATLFDVYRPQQASAGMLLGEKSLAVRLVLSSDAATLTDDDIEAAVQAVLANLQQ QLQARLRA >Mature_808_residues MQFPESWLREFCNPPLNTQQLAETLTMAGLEVEELKPVAPPFTKIVVGEIREAAQHPNADRLRICQVDVGQGSLLTIVCG APNARVGIKVPCALVGAELPPGEDGKPFLIKVGTLRGVESQGMLCSARELKLSEDHGGLLELAADAPLGQDIREHLQLDD TLFTLKLTPNLAHCLSVYGVAREVAALTGAPLKAPAFPAVPVADATQLPVKISAPDLCGRFSGRVVRNVNTQAATPSWMV DRLARCGQRSVTALVDISNYVMFELGRPSHIFDLDKIHGGLDVRWGKAGETLKLLNGNTVTVDEKVGVIADDVQVESLAG IMGGDATAVSDDTKHVYVEAAFWWPKAIAGRSRRYNFSTDAGHRFERGVDPGCTVEHIERISQLIIDICGTPETVCGPMN DAQVNLPQPTPVTMRVARAAKVIGMPLTQAQCLDVLQRLGLPVAQGEGTLTVTPPSYRFDLQIEEDLIEEVVRMVGYNEL PETPPLAPITARIRPEAERSPFAVRRALASLGYQETINFSFVEERWEHELAGNPNPIKLLNPIASQMSVMRSSLLGSLLQ VLKFNLDRKAPRVNVFELGRVFLRDAQSLNTDTTVAGFHQPMRVAGLAYGPRAALHWGQPDKAADFFDVKGDVEALLAPL QAVFVPATHPAMHPGRCASVSVAGRHIGFVGELHPQWRQGYEVAQAPLLFELELDTVLLRQVPSFTPVSKLQPVERDIAV IVQESVTHAALMAAVHGADTRGLLKGATLFDVYRPQQASAGMLLGEKSLAVRLVLSSDAATLTDDDIEAAVQAVLANLQQ QLQARLRA
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=813, Percent_Identity=42.0664206642066, Blast_Score=618, Evalue=1e-178,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 87538; Mature: 87538
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFPESWLREFCNPPLNTQQLAETLTMAGLEVEELKPVAPPFTKIVVGEIREAAQHPNAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCC RLRICQVDVGQGSLLTIVCGAPNARVGIKVPCALVGAELPPGEDGKPFLIKVGTLRGVES CEEEEEEECCCCCEEEEEECCCCCCEEEECCHHEECCCCCCCCCCCEEEEEEECCCCCCC QGMLCSARELKLSEDHGGLLELAADAPLGQDIREHLQLDDTLFTLKLTPNLAHCLSVYGV CCCEEEHHHCEECCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH AREVAALTGAPLKAPAFPAVPVADATQLPVKISAPDLCGRFSGRVVRNVNTQAATPSWMV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCEEECCCCCCCCHHHHH DRLARCGQRSVTALVDISNYVMFELGRPSHIFDLDKIHGGLDVRWGKAGETLKLLNGNTV HHHHHCCCCCEEEEEEECCEEEEEECCCCCEEEHHHHCCCCEEEECCCCCEEEEECCCEE TVDEKVGVIADDVQVESLAGIMGGDATAVSDDTKHVYVEAAFWWPKAIAGRSRRYNFSTD EEECCCCEEECCCCHHHHHHHCCCCCEEECCCCCEEEEEEEEECHHHHCCCCCCCCCCCC AGHRFERGVDPGCTVEHIERISQLIIDICGTPETVCGPMNDAQVNLPQPTPVTMRVARAA CCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEECCCCCCHHHHHHHHH KVIGMPLTQAQCLDVLQRLGLPVAQGEGTLTVTPPSYRFDLQIEEDLIEEVVRMVGYNEL HHHCCCCCHHHHHHHHHHHCCCEECCCCEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCC PETPPLAPITARIRPEAERSPFAVRRALASLGYQETINFSFVEERWEHELAGNPNPIKLL CCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCHHHH NPIASQMSVMRSSLLGSLLQVLKFNLDRKAPRVNVFELGRVFLRDAQSLNTDTTVAGFHQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHCCC PMRVAGLAYGPRAALHWGQPDKAADFFDVKGDVEALLAPLQAVFVPATHPAMHPGRCASV CHHHHHCCCCCCCEEECCCCCCCCCEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCEE SVAGRHIGFVGELHPQWRQGYEVAQAPLLFELELDTVLLRQVPSFTPVSKLQPVERDIAV EECCCEECEECCCCHHHHCCHHHHCCCEEEEEEHHHHHHHHCCCCCCHHHCCCHHHHHHH IVQESVTHAALMAAVHGADTRGLLKGATLFDVYRPQQASAGMLLGEKSLAVRLVLSSDAA HHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCEEEECCCEEEEEEEECCCC TLTDDDIEAAVQAVLANLQQQLQARLRA CCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQFPESWLREFCNPPLNTQQLAETLTMAGLEVEELKPVAPPFTKIVVGEIREAAQHPNAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCC RLRICQVDVGQGSLLTIVCGAPNARVGIKVPCALVGAELPPGEDGKPFLIKVGTLRGVES CEEEEEEECCCCCEEEEEECCCCCCEEEECCHHEECCCCCCCCCCCEEEEEEECCCCCCC QGMLCSARELKLSEDHGGLLELAADAPLGQDIREHLQLDDTLFTLKLTPNLAHCLSVYGV CCCEEEHHHCEECCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH AREVAALTGAPLKAPAFPAVPVADATQLPVKISAPDLCGRFSGRVVRNVNTQAATPSWMV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCEEECCCCCCCCHHHHH DRLARCGQRSVTALVDISNYVMFELGRPSHIFDLDKIHGGLDVRWGKAGETLKLLNGNTV HHHHHCCCCCEEEEEEECCEEEEEECCCCCEEEHHHHCCCCEEEECCCCCEEEEECCCEE TVDEKVGVIADDVQVESLAGIMGGDATAVSDDTKHVYVEAAFWWPKAIAGRSRRYNFSTD EEECCCCEEECCCCHHHHHHHCCCCCEEECCCCCEEEEEEEEECHHHHCCCCCCCCCCCC AGHRFERGVDPGCTVEHIERISQLIIDICGTPETVCGPMNDAQVNLPQPTPVTMRVARAA CCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEECCCCCCHHHHHHHHH KVIGMPLTQAQCLDVLQRLGLPVAQGEGTLTVTPPSYRFDLQIEEDLIEEVVRMVGYNEL HHHCCCCCHHHHHHHHHHHCCCEECCCCEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCC PETPPLAPITARIRPEAERSPFAVRRALASLGYQETINFSFVEERWEHELAGNPNPIKLL CCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCHHHH NPIASQMSVMRSSLLGSLLQVLKFNLDRKAPRVNVFELGRVFLRDAQSLNTDTTVAGFHQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHCCC PMRVAGLAYGPRAALHWGQPDKAADFFDVKGDVEALLAPLQAVFVPATHPAMHPGRCASV CHHHHHCCCCCCCEEECCCCCCCCCEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCEE SVAGRHIGFVGELHPQWRQGYEVAQAPLLFELELDTVLLRQVPSFTPVSKLQPVERDIAV EECCCEECEECCCCHHHHCCHHHHCCCEEEEEEHHHHHHHHCCCCCCHHHCCCHHHHHHH IVQESVTHAALMAAVHGADTRGLLKGATLFDVYRPQQASAGMLLGEKSLAVRLVLSSDAA HHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCEEEECCCEEEEEEEECCCC TLTDDDIEAAVQAVLANLQQQLQARLRA CCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]