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The map label for this gene is ihfA

Identifier: 91787981

GI number: 91787981

Start: 2198149

End: 2198484

Strand: Direct

Name: ihfA

Synonym: Bpro_2108

Alternate gene names: 91787981

Gene position: 2198149-2198484 (Clockwise)

Preceding gene: 91787980

Following gene: 91787982

Centisome position: 42.27

GC content: 54.17

Gene sequence:

>336_bases
ATGGAATTTTCTGTTGAAAGTCTGGAAACCCCAGCGCTGACCAAAGCGCATCTGGCTGAGTTGCTGTTTGAGCAGATAGG
GCTTAACAAGCGTGAATCGAAAGACATGATTGACGCGTTTTTTGACCTGATTTCCGACAGCCTGGTCGACGGCAATGACG
TGAAGATTTCCGGGTTCGGCAATTTCCAGATCCGTACCAAGGCGCCGCGTCCCGGCCGCAACCCGCGAACGGGTGAGGCC
ATTCCCATCCAGGCCCGCCGGGTGGTGACTTTTCACGCCAGCCACAAGCTTAAAGACCAAATCCAGGGCGACAGCGCTGC
TGATATTGCAGAATAA

Upstream 100 bases:

>100_bases
CAGTGCTTGCCAATCTGCAGCAACAACTGCAGGCCCGTCTTCGTGCTTGAAGCGCGCATGCAGCCGCCACAAAAACAATA
GCCGACTGGAGGATCGCCTC

Downstream 100 bases:

>100_bases
ATCATGCTTGCGTGGCTTTTAACGGCCTGTCAACTGGGTTTTTTCAGGGAAGCATGGGTTGTAACTAAATGTCATATTTG
TGACATAACAACACATTTCA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MEFSVESLETPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAPRPGRNPRTGEA
IPIQARRVVTFHASHKLKDQIQGDSAADIAE

Sequences:

>Translated_111_residues
MEFSVESLETPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAPRPGRNPRTGEA
IPIQARRVVTFHASHKLKDQIQGDSAADIAE
>Mature_111_residues
MEFSVESLETPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAPRPGRNPRTGEA
IPIQARRVVTFHASHKLKDQIQGDSAADIAE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=97, Percent_Identity=53.6082474226804, Blast_Score=114, Evalue=1e-27,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=34.4444444444444, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=34.4444444444444, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_POLSJ (Q12BQ7)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_548933.1
- ProteinModelPortal:   Q12BQ7
- SMR:   Q12BQ7
- STRING:   Q12BQ7
- GeneID:   4015256
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_2108
- NMPDR:   fig|296591.1.peg.3967
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- PhylomeDB:   Q12BQ7
- ProtClustDB:   PRK00285
- BioCyc:   PSP296591:BPRO_2108-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 12280; Mature: 12280

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSVESLETPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFG
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
NFQIRTKAPRPGRNPRTGEAIPIQARRVVTFHASHKLKDQIQGDSAADIAE
CEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEFSVESLETPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFG
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
NFQIRTKAPRPGRNPRTGEAIPIQARRVVTFHASHKLKDQIQGDSAADIAE
CEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA