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The map label for this gene is ydcN [H]

Identifier: 91787958

GI number: 91787958

Start: 2170572

End: 2171195

Strand: Direct

Name: ydcN [H]

Synonym: Bpro_2085

Alternate gene names: 91787958

Gene position: 2170572-2171195 (Clockwise)

Preceding gene: 91787957

Following gene: 91787959

Centisome position: 41.74

GC content: 61.06

Gene sequence:

>624_bases
ATGATGGAAAATAATTCCACCATGAGAGAGCAAAAGTCAGCCAGCTTGAACGACCGCATTGCGCAACGCGTGCGGGATTT
GCGGGCGGCTCGCAGCCTCTCGCTTGATGCCCTGGCCACGCACTGTGGGGTTAGCCGCTCCATGATCTCGCTGATTGAGC
GGGGCGAAAGCAGTCCAACCGCCGTGCTACTTGAGAAACTGGCCACGGGTCTGAACGTTCCGCTGGCATCGCTGTTCGAG
GCACCCCAGCCCACCAAAGATCCCGTGGCGCGTTTGGCTGATCAACCGTCGTGGCGGGATCCCCATTCCGGCTATGTACG
AAGAAACGTATCTCCCAGCGGCGTTGCCTCGCCCATCCAGATCGTTGAAGTGTCGTTTCCTGCCAAAGCGCGTGTGGCCT
ACGAAACCGGCGCCCGGGAGGCACAGATTCACCAGCAGGTGTGGGTGCTCGAGGGCTCCATCGAAGTCACTGTGGGTGAC
GACCAGCATCGGCTTGGCACCGGTGACTGCCTGGCGCTGGTGCTGGATCGTCCTGTGAGCTACCACAACCCCACTCGCAA
GACCGCGCGCTATGCCGTCGTGATCACGACCTTGCCTTCAACCGCTGCCGCCCTCTGGAGATGA

Upstream 100 bases:

>100_bases
ATAAGTAAGCAACGCCTTCAAACTGCATACCCAACAACGAACAACGCCGCATGTCTGCGCGGTGAAGCGGTCGTGCCACT
CGCTTGACCTGAAATCCAAT

Downstream 100 bases:

>100_bases
CATGTCAATGAACACCCCAGTCCCCACCCCCCGCATTCGCCGGCTGCTGGCCGTCACCGACGCACAGGTGCAGGCGCTGG
CCGATCTGCTGATCGACTCT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MMENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGLNVPLASLFE
APQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQIVEVSFPAKARVAYETGAREAQIHQQVWVLEGSIEVTVGD
DQHRLGTGDCLALVLDRPVSYHNPTRKTARYAVVITTLPSTAAALWR

Sequences:

>Translated_207_residues
MMENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGLNVPLASLFE
APQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQIVEVSFPAKARVAYETGAREAQIHQQVWVLEGSIEVTVGD
DQHRLGTGDCLALVLDRPVSYHNPTRKTARYAVVITTLPSTAAALWR
>Mature_207_residues
MMENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGLNVPLASLFE
APQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQIVEVSFPAKARVAYETGAREAQIHQQVWVLEGSIEVTVGD
DQHRLGTGDCLALVLDRPVSYHNPTRKTARYAVVITTLPSTAAALWR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=177, Percent_Identity=28.2485875706215, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22605; Mature: 22605

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPT
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHH
AVLLEKLATGLNVPLASLFEAPQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQ
HHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCEE
IVEVSFPAKARVAYETGAREAQIHQQVWVLEGSIEVTVGDDQHRLGTGDCLALVLDRPVS
EEEECCCCCEEEEECCCCHHHHHHHEEEEEECEEEEEECCCCCCCCCHHHHHHHHCCCCC
YHNPTRKTARYAVVITTLPSTAAALWR
CCCCCCCCCEEEEEEEECCCHHHHHCC
>Mature Secondary Structure
MMENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPT
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHH
AVLLEKLATGLNVPLASLFEAPQPTKDPVARLADQPSWRDPHSGYVRRNVSPSGVASPIQ
HHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCEE
IVEVSFPAKARVAYETGAREAQIHQQVWVLEGSIEVTVGDDQHRLGTGDCLALVLDRPVS
EEEECCCCCEEEEECCCCHHHHHHHEEEEEECEEEEEECCCCCCCCCHHHHHHHHCCCCC
YHNPTRKTARYAVVITTLPSTAAALWR
CCCCCCCCCEEEEEEEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]