| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pbpG [H]
Identifier: 91787957
GI number: 91787957
Start: 2168367
End: 2170394
Strand: Direct
Name: pbpG [H]
Synonym: Bpro_2084
Alternate gene names: 91787957
Gene position: 2168367-2170394 (Clockwise)
Preceding gene: 91787954
Following gene: 91787958
Centisome position: 41.7
GC content: 65.19
Gene sequence:
>2028_bases ATGACCCCGGCCCTGCACCGCGCAGCCACTTTTACCGCTGAACAGTTCCACCGCCTCATGGGCGCCATCAGGCGGCACCC CGTGCGGGCGGCTTTGGTGCTGCCGGCGCTGATGCTGCTTTATGTACTGGTGCTGATTCCGTTCACGCCCGGCATTGGCG ACTTGCGCAAGGCCAAGTCTGAAACGCCCTCGGTGCTGCTGGCTTCTGATGGCACGGTGCTGGCCGAGTACAGGCGTATC AACCGGCAGTGGGTGACGCTGGACAAGATTTCGCCCAACGTCGTTAACGCGCTGATCGCCACAGAAGACCACCGATTTTA CGAGCACCACGGCATCGACTTCCGGCGTATCGCGGGGGCGGTGCTCAGTACCTTGTCGGGCGATTTGCAGGGTGGCTCGA CCATCACGCAGCAGCTGGCGCGCAACTTGTACCCCGAGGAGATCGGCCGCGCCACCAGCATCACGCGCAAGGTCAAGGAG GCGATCACCGCGCTGAAGATCGAGGCGGTGTATTCCAAGCGCGAGATCCTGGAGACCTATCTCAACACCGTGCCTTTTTT GTACAACGCCTTCGGCATCGAAATGGCCGCGCGCACCTATTTCGACAAGTCGGCCTACAAGCTGGATGTGCTGGAGAGCG CCACGCTGATCGGCATGCTCAAGGGCACGAGTTATTACAACCCGGTGTTGAACCCGGAGCGCGCCGTGCAGCGCCGCAAC CTGGTGCTGGCGCAGATGGCCAAGCACGGCAAGCTGGACCCGGCCCGGGTTGAGGTGCTGGCCAAACGGCCGCTCAAGCT AGACTTTGAGCGGCAGACCGAGGCGCTGGGCCCGGCGCCGCACGTGGCCCAACACTTGCGCAAATGGCTGATTGCCTGGG CCGACCACAAGGGCTTCGACATTCATTCGGACGGCCTGCGGGTGCGCACCACCCTCGACGCCAAGATCCAGAAGGCGGCC AACCAGGCGGTGGCCCGGCAGATGGCGCAATTGCAAACGCTGGCAGACGGCCGGCGCAAGGCGGGGCAGGAGCGGCCCGT GCTGCAGGCCGGCTTCCTCGCGCTCGACCCGCGCAACGGCGCCGTGCGGGCCTGGGTGGGCAGCCGCGACTTTGCGCAGG AGCAGTTTGACCATGTGAGCCAGGCGCGGCGCCAGCCGGGCTCGACCTTCAAGCCCTTTGTTTATGGCGCGGCCTTCATG CTGGGGCTGGACCCGCTGGACACCTTGATCGACCAGCCTGTGGCCATCTCGCAGCAGGGCGCCGGGGTGTGGACGCCCAG CGATGCAACGCCGCCCACTTACATGCCCACCACCCTGCGCGACGGGCTGGTGTATTCCAAAAACACCATCACGGCCCAGC TGATGCAGAAGGTGGGGCCAGCCAAAGTAGGGGCGCTGGCGCAGGCCATGGGCGTGCGGCAGAGCAAGCTGGACCTGGTG CCGTCACTCGCGCTGGGCACCAGCCCCGTCACGCTGCTGGAGATGGTCACCGCCTACGGCTCCATTGCCAATGGCGGCAG TTATATGCCGCCGGTGCTGGTGCTGCGCGTGGAAGACCGCAACGGCCGGCTGCTGGAGCAGTTCGAGCCCGTCAGGGAGC GCGAACCGGCCATGCCGCGTGCGCATGCGCTGACTTTGGTGAATGCGATGCGCGGTGTGATTGACGAGGGCACGGGCACG GCCATTCGCCAGCGCTATGGCATCCAGGCCGACGTGGCCGGCAAGACCGGCACCACGCAAGACAACACCGACGGCTGGTT CATCATGATGAACTCGCAACTGGTGGCCGGCGCCCGGGTCGGCTTTAACGACAACAGCGTGACCATGGGCACCTGGGGGC AGGGTGCCCGCAGCGCGCTGCCCATGGTGGGCGAGGTTTTTCAGCAAGGCTTTCGCAACCGCTGGCTTGACCAGAACGCT GAATTCGACATTCCGCGCCCACGGCCCGCTCCGCCGGAGCAGGCGCCGGTCATGGAGATCATGAATGGCTTGTTTGGCAG GATCTTTCGGCAGTTGCAGGGGAACTGA
Upstream 100 bases:
>100_bases AGCAGCTTATGGTGACCATTCCACGAGACTGCAGCCAGATGTAACACCGAAGGGTCGGCAAAGTTACAAACTGGGTTGAC TGTCACCTTAAACTTGGTCC
Downstream 100 bases:
>100_bases CTGAAGACGCTACAAAAAGGGTAGTTGCTTGCCGCCCGTGTTTATTGAGCTAGAGGCTTATTTGGCTTATTTGGCTAATA AGTAAGCAACGCCTTCAAAC
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 675; Mature: 674
Protein sequence:
>675_residues MTPALHRAATFTAEQFHRLMGAIRRHPVRAALVLPALMLLYVLVLIPFTPGIGDLRKAKSETPSVLLASDGTVLAEYRRI NRQWVTLDKISPNVVNALIATEDHRFYEHHGIDFRRIAGAVLSTLSGDLQGGSTITQQLARNLYPEEIGRATSITRKVKE AITALKIEAVYSKREILETYLNTVPFLYNAFGIEMAARTYFDKSAYKLDVLESATLIGMLKGTSYYNPVLNPERAVQRRN LVLAQMAKHGKLDPARVEVLAKRPLKLDFERQTEALGPAPHVAQHLRKWLIAWADHKGFDIHSDGLRVRTTLDAKIQKAA NQAVARQMAQLQTLADGRRKAGQERPVLQAGFLALDPRNGAVRAWVGSRDFAQEQFDHVSQARRQPGSTFKPFVYGAAFM LGLDPLDTLIDQPVAISQQGAGVWTPSDATPPTYMPTTLRDGLVYSKNTITAQLMQKVGPAKVGALAQAMGVRQSKLDLV PSLALGTSPVTLLEMVTAYGSIANGGSYMPPVLVLRVEDRNGRLLEQFEPVREREPAMPRAHALTLVNAMRGVIDEGTGT AIRQRYGIQADVAGKTGTTQDNTDGWFIMMNSQLVAGARVGFNDNSVTMGTWGQGARSALPMVGEVFQQGFRNRWLDQNA EFDIPRPRPAPPEQAPVMEIMNGLFGRIFRQLQGN
Sequences:
>Translated_675_residues MTPALHRAATFTAEQFHRLMGAIRRHPVRAALVLPALMLLYVLVLIPFTPGIGDLRKAKSETPSVLLASDGTVLAEYRRI NRQWVTLDKISPNVVNALIATEDHRFYEHHGIDFRRIAGAVLSTLSGDLQGGSTITQQLARNLYPEEIGRATSITRKVKE AITALKIEAVYSKREILETYLNTVPFLYNAFGIEMAARTYFDKSAYKLDVLESATLIGMLKGTSYYNPVLNPERAVQRRN LVLAQMAKHGKLDPARVEVLAKRPLKLDFERQTEALGPAPHVAQHLRKWLIAWADHKGFDIHSDGLRVRTTLDAKIQKAA NQAVARQMAQLQTLADGRRKAGQERPVLQAGFLALDPRNGAVRAWVGSRDFAQEQFDHVSQARRQPGSTFKPFVYGAAFM LGLDPLDTLIDQPVAISQQGAGVWTPSDATPPTYMPTTLRDGLVYSKNTITAQLMQKVGPAKVGALAQAMGVRQSKLDLV PSLALGTSPVTLLEMVTAYGSIANGGSYMPPVLVLRVEDRNGRLLEQFEPVREREPAMPRAHALTLVNAMRGVIDEGTGT AIRQRYGIQADVAGKTGTTQDNTDGWFIMMNSQLVAGARVGFNDNSVTMGTWGQGARSALPMVGEVFQQGFRNRWLDQNA EFDIPRPRPAPPEQAPVMEIMNGLFGRIFRQLQGN >Mature_674_residues TPALHRAATFTAEQFHRLMGAIRRHPVRAALVLPALMLLYVLVLIPFTPGIGDLRKAKSETPSVLLASDGTVLAEYRRIN RQWVTLDKISPNVVNALIATEDHRFYEHHGIDFRRIAGAVLSTLSGDLQGGSTITQQLARNLYPEEIGRATSITRKVKEA ITALKIEAVYSKREILETYLNTVPFLYNAFGIEMAARTYFDKSAYKLDVLESATLIGMLKGTSYYNPVLNPERAVQRRNL VLAQMAKHGKLDPARVEVLAKRPLKLDFERQTEALGPAPHVAQHLRKWLIAWADHKGFDIHSDGLRVRTTLDAKIQKAAN QAVARQMAQLQTLADGRRKAGQERPVLQAGFLALDPRNGAVRAWVGSRDFAQEQFDHVSQARRQPGSTFKPFVYGAAFML GLDPLDTLIDQPVAISQQGAGVWTPSDATPPTYMPTTLRDGLVYSKNTITAQLMQKVGPAKVGALAQAMGVRQSKLDLVP SLALGTSPVTLLEMVTAYGSIANGGSYMPPVLVLRVEDRNGRLLEQFEPVREREPAMPRAHALTLVNAMRGVIDEGTGTA IRQRYGIQADVAGKTGTTQDNTDGWFIMMNSQLVAGARVGFNDNSVTMGTWGQGARSALPMVGEVFQQGFRNRWLDQNAE FDIPRPRPAPPEQAPVMEIMNGLFGRIFRQLQGN
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=535, Percent_Identity=33.6448598130841, Blast_Score=214, Evalue=1e-56, Organism=Escherichia coli, GI87082258, Length=284, Percent_Identity=37.3239436619718, Blast_Score=179, Evalue=4e-46, Organism=Escherichia coli, GI1788867, Length=577, Percent_Identity=29.6360485268631, Blast_Score=166, Evalue=5e-42, Organism=Escherichia coli, GI1789601, Length=170, Percent_Identity=40.5882352941176, Blast_Score=97, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 74453; Mature: 74322
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPALHRAATFTAEQFHRLMGAIRRHPVRAALVLPALMLLYVLVLIPFTPGIGDLRKAKS CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC ETPSVLLASDGTVLAEYRRINRQWVTLDKISPNVVNALIATEDHRFYEHHGIDFRRIAGA CCCCEEEECCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHH VLSTLSGDLQGGSTITQQLARNLYPEEIGRATSITRKVKEAITALKIEAVYSKREILETY HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNTVPFLYNAFGIEMAARTYFDKSAYKLDVLESATLIGMLKGTSYYNPVLNPERAVQRRN HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LVLAQMAKHGKLDPARVEVLAKRPLKLDFERQTEALGPAPHVAQHLRKWLIAWADHKGFD HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCE IHSDGLRVRTTLDAKIQKAANQAVARQMAQLQTLADGRRKAGQERPVLQAGFLALDPRNG ECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEECCCCC AVRAWVGSRDFAQEQFDHVSQARRQPGSTFKPFVYGAAFMLGLDPLDTLIDQPVAISQQG CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEECCCC AGVWTPSDATPPTYMPTTLRDGLVYSKNTITAQLMQKVGPAKVGALAQAMGVRQSKLDLV CCCCCCCCCCCCCCCCCHHHCCEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH PSLALGTSPVTLLEMVTAYGSIANGGSYMPPVLVLRVEDRNGRLLEQFEPVREREPAMPR HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCHHHCCCCCCH AHALTLVNAMRGVIDEGTGTAIRQRYGIQADVAGKTGTTQDNTDGWFIMMNSQLVAGARV HHHHHHHHHHHHHHCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECEEE GFNDNSVTMGTWGQGARSALPMVGEVFQQGFRNRWLDQNAEFDIPRPRPAPPEQAPVMEI CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH MNGLFGRIFRQLQGN HHHHHHHHHHHHCCC >Mature Secondary Structure TPALHRAATFTAEQFHRLMGAIRRHPVRAALVLPALMLLYVLVLIPFTPGIGDLRKAKS CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC ETPSVLLASDGTVLAEYRRINRQWVTLDKISPNVVNALIATEDHRFYEHHGIDFRRIAGA CCCCEEEECCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHH VLSTLSGDLQGGSTITQQLARNLYPEEIGRATSITRKVKEAITALKIEAVYSKREILETY HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNTVPFLYNAFGIEMAARTYFDKSAYKLDVLESATLIGMLKGTSYYNPVLNPERAVQRRN HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LVLAQMAKHGKLDPARVEVLAKRPLKLDFERQTEALGPAPHVAQHLRKWLIAWADHKGFD HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCE IHSDGLRVRTTLDAKIQKAANQAVARQMAQLQTLADGRRKAGQERPVLQAGFLALDPRNG ECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEECCCCC AVRAWVGSRDFAQEQFDHVSQARRQPGSTFKPFVYGAAFMLGLDPLDTLIDQPVAISQQG CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEECCCC AGVWTPSDATPPTYMPTTLRDGLVYSKNTITAQLMQKVGPAKVGALAQAMGVRQSKLDLV CCCCCCCCCCCCCCCCCHHHCCEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH PSLALGTSPVTLLEMVTAYGSIANGGSYMPPVLVLRVEDRNGRLLEQFEPVREREPAMPR HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCHHHCCCCCCH AHALTLVNAMRGVIDEGTGTAIRQRYGIQADVAGKTGTTQDNTDGWFIMMNSQLVAGARV HHHHHHHHHHHHHHCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECEEE GFNDNSVTMGTWGQGARSALPMVGEVFQQGFRNRWLDQNAEFDIPRPRPAPPEQAPVMEI CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH MNGLFGRIFRQLQGN HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]