| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ilvD [H]
Identifier: 91787928
GI number: 91787928
Start: 2132690
End: 2134384
Strand: Reverse
Name: ilvD [H]
Synonym: Bpro_2052
Alternate gene names: 91787928
Gene position: 2134384-2132690 (Counterclockwise)
Preceding gene: 91787930
Following gene: 91787926
Centisome position: 41.04
GC content: 63.48
Gene sequence:
>1695_bases ATGGAAACCAAGACCATTCAGCTCAACCCCCGCAGCAAAAACATCACCGAAGGCAAATCGCGCGCGCCCAACCGCTCGAT GTACTACGCCATGGGCTATGAAGAGGCCGACTTCAAGAAGCCCATGATTGGTGTGGCCAACGGGCACAGCACCATCACCC CCTGCAACAGCGGCCTGCAAAAGCTGGCGGACGCGGCCATTGCCGGCATTGAAGAAGCCGGCGGCAACGCCCAGGTGTTC GGCACGCCCACCATCTCGGACGGCATGGCCATGGGCACCGAGGGCATGAAGTACTCGCTGGTCAGCCGCGAAGTGATCTC CGACTGCATCGAAACCTGCGTGCAGGGCCAGTGGATGGACGGCGTGCTGGTGATCGGCGGCTGCGACAAGAACATGCCCG GCGGCCTGATGGGCATGCTGCGCGCCAACGTGCCGGCCATCTACGTCTATGGCGGTACCATTTTGCCGGGCAGCTACAAG GGCAAAGACCTCAACATCGTCAGCGTGTTTGAAGCCGTCGGCGAAAACGCAGCAGGCCGCATGAGCGATGAAGACCTGCT GCAAATCGAGCGCCGCGCCATTCCCGGCACCGGTAGCTGCGGCGGCATGTACACGGCCAACACCATGTCCAGCGCCTTCG AGGCGCTCGGCATTTCGCTGCCCTACTCCAGCACCATGGCCAATCCGCACGACGAGAAAATGAACTCGGCCAGGGAGTCC GCCAAGGTCCTGGTCGAAGCCATCAAGAAAGACATCAAGCCGCGCGATCTCGTCACGAAGAAAGCCATTGAAAACGCCGT GGCAGTGATCATGGCCACGGGCGGCTCCACCAATGCCGTGCTGCACTTCCTGGCGATTGCGCATGCCGCCGGCGTGGACT GGACAATCGACGACTTCGAACGCGTGCGCCAAAGAACGCCGGTGCTGTGCGACCTGAAGCCGTCCGGCAAGTACCTGGCC GTGGACCTGCACCGCGCCGGCGGCATTCCGCAGGTCATGAAGATGCTGCTGGCGGCCGGCCTGCTGCATGGCGACTGCCT GACGATCACCGGCCAAACCATTGCCGAGGTGCTGAAGGATGTGCCCGAAGCGCCGCGCGCCGACCAGGACGTGATTCGCC CCATCAGCAACCCCATGTACGCCCAGGGCCACCTGGCCATCCTGAAGGGCAACCTCTCGCCTGAAGGCTGCGTGGCCAAA ATCACCGGCCTGAAAAACCCGGTCATGACGGGCCCGGCCCGCGTATTTGACGACGAGCAGTCGGCGCTGGCCGCCATCCT GGCCGGCAAGATCAAGGCGGGCGACGTGATGGTGCTGCGTTACCTCGGCCCCAAGGGCGGTCCCGGCATGCCTGAAATGC TGGCGCCTACCGGTGCGCTGATTGGCGCCGGCCTGGGCGAAAGCGTGGGCCTGATCACCGACGGCCGCTTCTCCGGCGGC ACCTGGGGCATGGTAGTCGGCCATGTGGCCCCCGAAGCGGCCGCCGGCGGCAATATCGCATTCATCAACGAAGGCGACTC CATCACCATTGACTCAAAACAGTTGCTGCTGCAACTGAACATCAGCGACGCGGAGCTGGAAAAACGCAAGGTCGGCTGGA AAGCACCGGCACCGCGCTACAACCGCGGCGTGCAGGCCAAGTTTGCCTTCAACGCGTCGAGTGCCAGCAAGGGTGCGGTG CTGGACGACTATTGA
Upstream 100 bases:
>100_bases CATACTCGGCTTTCCGGTAAAAATATCCCACATGCATCCGCCCGTGCCCGCGTGTGAAGCGCATGACATCCGGTGCGACA ACAAACCTCACGAGACATCC
Downstream 100 bases:
>100_bases TGCCGGCTGACCGGTAAAACAAAAAAGAGCCCGTAAGTCACAGACTTCACGGGCTCTTTACTTTGGTAACAGGGCAACTC CTGGCGGCCCGAAATGCAGT
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues METKTIQLNPRSKNITEGKSRAPNRSMYYAMGYEEADFKKPMIGVANGHSTITPCNSGLQKLADAAIAGIEEAGGNAQVF GTPTISDGMAMGTEGMKYSLVSREVISDCIETCVQGQWMDGVLVIGGCDKNMPGGLMGMLRANVPAIYVYGGTILPGSYK GKDLNIVSVFEAVGENAAGRMSDEDLLQIERRAIPGTGSCGGMYTANTMSSAFEALGISLPYSSTMANPHDEKMNSARES AKVLVEAIKKDIKPRDLVTKKAIENAVAVIMATGGSTNAVLHFLAIAHAAGVDWTIDDFERVRQRTPVLCDLKPSGKYLA VDLHRAGGIPQVMKMLLAAGLLHGDCLTITGQTIAEVLKDVPEAPRADQDVIRPISNPMYAQGHLAILKGNLSPEGCVAK ITGLKNPVMTGPARVFDDEQSALAAILAGKIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGAGLGESVGLITDGRFSGG TWGMVVGHVAPEAAAGGNIAFINEGDSITIDSKQLLLQLNISDAELEKRKVGWKAPAPRYNRGVQAKFAFNASSASKGAV LDDY
Sequences:
>Translated_564_residues METKTIQLNPRSKNITEGKSRAPNRSMYYAMGYEEADFKKPMIGVANGHSTITPCNSGLQKLADAAIAGIEEAGGNAQVF GTPTISDGMAMGTEGMKYSLVSREVISDCIETCVQGQWMDGVLVIGGCDKNMPGGLMGMLRANVPAIYVYGGTILPGSYK GKDLNIVSVFEAVGENAAGRMSDEDLLQIERRAIPGTGSCGGMYTANTMSSAFEALGISLPYSSTMANPHDEKMNSARES AKVLVEAIKKDIKPRDLVTKKAIENAVAVIMATGGSTNAVLHFLAIAHAAGVDWTIDDFERVRQRTPVLCDLKPSGKYLA VDLHRAGGIPQVMKMLLAAGLLHGDCLTITGQTIAEVLKDVPEAPRADQDVIRPISNPMYAQGHLAILKGNLSPEGCVAK ITGLKNPVMTGPARVFDDEQSALAAILAGKIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGAGLGESVGLITDGRFSGG TWGMVVGHVAPEAAAGGNIAFINEGDSITIDSKQLLLQLNISDAELEKRKVGWKAPAPRYNRGVQAKFAFNASSASKGAV LDDY >Mature_564_residues METKTIQLNPRSKNITEGKSRAPNRSMYYAMGYEEADFKKPMIGVANGHSTITPCNSGLQKLADAAIAGIEEAGGNAQVF GTPTISDGMAMGTEGMKYSLVSREVISDCIETCVQGQWMDGVLVIGGCDKNMPGGLMGMLRANVPAIYVYGGTILPGSYK GKDLNIVSVFEAVGENAAGRMSDEDLLQIERRAIPGTGSCGGMYTANTMSSAFEALGISLPYSSTMANPHDEKMNSARES AKVLVEAIKKDIKPRDLVTKKAIENAVAVIMATGGSTNAVLHFLAIAHAAGVDWTIDDFERVRQRTPVLCDLKPSGKYLA VDLHRAGGIPQVMKMLLAAGLLHGDCLTITGQTIAEVLKDVPEAPRADQDVIRPISNPMYAQGHLAILKGNLSPEGCVAK ITGLKNPVMTGPARVFDDEQSALAAILAGKIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGAGLGESVGLITDGRFSGG TWGMVVGHVAPEAAAGGNIAFINEGDSITIDSKQLLLQLNISDAELEKRKVGWKAPAPRYNRGVQAKFAFNASSASKGAV LDDY
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=607, Percent_Identity=40.1976935749588, Blast_Score=400, Evalue=1e-112, Organism=Escherichia coli, GI2367371, Length=485, Percent_Identity=35.6701030927835, Blast_Score=208, Evalue=7e-55, Organism=Escherichia coli, GI1786464, Length=517, Percent_Identity=34.4294003868472, Blast_Score=202, Evalue=5e-53, Organism=Escherichia coli, GI1788157, Length=482, Percent_Identity=31.5352697095436, Blast_Score=196, Evalue=4e-51, Organism=Saccharomyces cerevisiae, GI6322476, Length=564, Percent_Identity=47.1631205673759, Blast_Score=519, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 59344; Mature: 59344
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METKTIQLNPRSKNITEGKSRAPNRSMYYAMGYEEADFKKPMIGVANGHSTITPCNSGLQ CCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEECCHHHHHH KLADAAIAGIEEAGGNAQVFGTPTISDGMAMGTEGMKYSLVSREVISDCIETCVQGQWMD HHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCEEHHHHHHHHHHHHHHHHCCCCCC GVLVIGGCDKNMPGGLMGMLRANVPAIYVYGGTILPGSYKGKDLNIVSVFEAVGENAAGR CEEEEECCCCCCCCHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHCCCCCCC MSDEDLLQIERRAIPGTGSCGGMYTANTMSSAFEALGISLPYSSTMANPHDEKMNSARES CCHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHH AKVLVEAIKKDIKPRDLVTKKAIENAVAVIMATGGSTNAVLHFLAIAHAAGVDWTIDDFE HHHHHHHHHHCCCCHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHH RVRQRTPVLCDLKPSGKYLAVDLHRAGGIPQVMKMLLAAGLLHGDCLTITGQTIAEVLKD HHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHH VPEAPRADQDVIRPISNPMYAQGHLAILKGNLSPEGCVAKITGLKNPVMTGPARVFDDEQ CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHCCCHH SALAAILAGKIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGAGLGESVGLITDGRFSGG HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHCCCCHHHCCCCCCCCCEEECCCCCCC TWGMVVGHVAPEAAAGGNIAFINEGDSITIDSKQLLLQLNISDAELEKRKVGWKAPAPRY EEEEEEECCCCCCCCCCCEEEEECCCEEEEECCEEEEEECCCHHHHHHHHCCCCCCCCCC NRGVQAKFAFNASSASKGAVLDDY CCCCEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure METKTIQLNPRSKNITEGKSRAPNRSMYYAMGYEEADFKKPMIGVANGHSTITPCNSGLQ CCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEECCHHHHHH KLADAAIAGIEEAGGNAQVFGTPTISDGMAMGTEGMKYSLVSREVISDCIETCVQGQWMD HHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCEEHHHHHHHHHHHHHHHHCCCCCC GVLVIGGCDKNMPGGLMGMLRANVPAIYVYGGTILPGSYKGKDLNIVSVFEAVGENAAGR CEEEEECCCCCCCCHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHCCCCCCC MSDEDLLQIERRAIPGTGSCGGMYTANTMSSAFEALGISLPYSSTMANPHDEKMNSARES CCHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHH AKVLVEAIKKDIKPRDLVTKKAIENAVAVIMATGGSTNAVLHFLAIAHAAGVDWTIDDFE HHHHHHHHHHCCCCHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHH RVRQRTPVLCDLKPSGKYLAVDLHRAGGIPQVMKMLLAAGLLHGDCLTITGQTIAEVLKD HHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHH VPEAPRADQDVIRPISNPMYAQGHLAILKGNLSPEGCVAKITGLKNPVMTGPARVFDDEQ CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHCCCHH SALAAILAGKIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGAGLGESVGLITDGRFSGG HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHCCCCHHHCCCCCCCCCEEECCCCCCC TWGMVVGHVAPEAAAGGNIAFINEGDSITIDSKQLLLQLNISDAELEKRKVGWKAPAPRY EEEEEEECCCCCCCCCCCEEEEECCCEEEEECCEEEEEECCCHHHHHHHHCCCCCCCCCC NRGVQAKFAFNASSASKGAVLDDY CCCCEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA