| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787856
Identifier: 91787856
GI number: 91787856
Start: 2047500
End: 2048690
Strand: Reverse
Name: 91787856
Synonym: Bpro_1980
Alternate gene names: NA
Gene position: 2048690-2047500 (Counterclockwise)
Preceding gene: 91787857
Following gene: 91787855
Centisome position: 39.4
GC content: 54.32
Gene sequence:
>1191_bases ATGGCGGTCATCAGCATTTCCAAACTCTTGCTGTTCATCTTTGCGGCTGCGACTCTGCTGTTTTTCGAGCGCAGGTCGGT GGGCAGCCCAGCGCTTGCCAGAACATACACCCCTACAGCTGTTCTAGTAGTCCTTCTCGCATTCACTATAAGTCTGTTCT GGACGACTGCCCCGTCGGCAGATGCCATGGGATCGATAGCGAAGTACGGCAAGCTCCTCCTGATTGTGCTGATGATGACC TTGATCCAGGATCGGCGCGAGGCCATGTATGCGCTTGGCGCGTTTGTTCTAGCCCAATTGTTTCTCATGCTCAGTTCATG GATGCTGTTCATTCACCTGCCGGTTCCCTGGGCAACGTCCCGCATGGCGCTGAAAGAGTTCGCGGTGTTTTCAAGCTACC TCGATCAAGGCATCATAGGTGCCGTACTTGCAGCCATCTGCTGGCATCTGCGTCATCTCGCACCGGGTCGATTTGGCCCG CACTTCGCGGTTCTCGCGGCTCTGGCTTATTTGTGCAATGTGCTCTTTGTTCTGAACGGACGAAGCGGACACTTGGTCGC CATTGCCATGCTGTCCCTTGCGATCATGTGGGAACTTCCGAAGCGATACCGCGCAGCCGTCGTCCTGTTGCCGTTTGTCC TGGTTGGGGCTCTGTTTCTTAGCTCGCACAAAGTGCGCGATCGATTAATCATGATGAAGATGGAAGTGGAGTCGCATTCA GCACACGCTCAACCCAATACGTCGTCGGGTCTCCGGCTCCATTTTTGGATGAACTCTATTCAAATGATTGCCCGGCATCC GGTTGCTGGATCGGGGGTTGGTAGCTGGAGCACCGAATACAACCGCATCCAACGCGATCTTGATCCGGCGCATAAAGATA TAGCAGGCAACTTTAACCCGCATCAGGAATTTCTCTTGTGGGCGGTTCAATTGGGAATTCCGGGTCTTCTGCTTCTTTGC GGTTTAATGCTGGCGATGATTCGGGATTCGTGGACTATGGAGAAACCCTATGCGCGAGTCGTGCAATCCACCGTAGTGGC TTTGGCCGTCGCCTGCCTTTTCAACGCAAGCATTTACGACGCCCTGATAGGCGATTTTTTTGCTGTGACGCTCGGCTTAT TGCTGGCTCTGGGACTCACTGCCAACGCAAGTAAGCCCTCCGCCATGTCCGCTCAACCCGGGGCGATATGA
Upstream 100 bases:
>100_bases CCAATCAAATCTTGAAATATCCCGTACTAATTTGATTAAGCAGACCGCCAATGTTCGACTCGCCGTGATTTGCCTGGCCG CTGCATCGGTGGGTTTGTCA
Downstream 100 bases:
>100_bases CGCAGCTGTCAGAGCCCGTACCCGTTAGCTTAGCCGCCAGGCGATCCTTGTGGCAAAGGGTCGCGCGCGTCTGGCCCTAT TTCAGCGGCTCGCGGGCAGG
Product: O-antigen polymerase
Products: NA
Alternate protein names: O-Antigen Ligase; Lipid A Core; O-Antigen Biosynthesis Protein Wzy_C Domain Protein; Inner Membrane Protein
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MAVISISKLLLFIFAAATLLFFERRSVGSPALARTYTPTAVLVVLLAFTISLFWTTAPSADAMGSIAKYGKLLLIVLMMT LIQDRREAMYALGAFVLAQLFLMLSSWMLFIHLPVPWATSRMALKEFAVFSSYLDQGIIGAVLAAICWHLRHLAPGRFGP HFAVLAALAYLCNVLFVLNGRSGHLVAIAMLSLAIMWELPKRYRAAVVLLPFVLVGALFLSSHKVRDRLIMMKMEVESHS AHAQPNTSSGLRLHFWMNSIQMIARHPVAGSGVGSWSTEYNRIQRDLDPAHKDIAGNFNPHQEFLLWAVQLGIPGLLLLC GLMLAMIRDSWTMEKPYARVVQSTVVALAVACLFNASIYDALIGDFFAVTLGLLLALGLTANASKPSAMSAQPGAI
Sequences:
>Translated_396_residues MAVISISKLLLFIFAAATLLFFERRSVGSPALARTYTPTAVLVVLLAFTISLFWTTAPSADAMGSIAKYGKLLLIVLMMT LIQDRREAMYALGAFVLAQLFLMLSSWMLFIHLPVPWATSRMALKEFAVFSSYLDQGIIGAVLAAICWHLRHLAPGRFGP HFAVLAALAYLCNVLFVLNGRSGHLVAIAMLSLAIMWELPKRYRAAVVLLPFVLVGALFLSSHKVRDRLIMMKMEVESHS AHAQPNTSSGLRLHFWMNSIQMIARHPVAGSGVGSWSTEYNRIQRDLDPAHKDIAGNFNPHQEFLLWAVQLGIPGLLLLC GLMLAMIRDSWTMEKPYARVVQSTVVALAVACLFNASIYDALIGDFFAVTLGLLLALGLTANASKPSAMSAQPGAI >Mature_395_residues AVISISKLLLFIFAAATLLFFERRSVGSPALARTYTPTAVLVVLLAFTISLFWTTAPSADAMGSIAKYGKLLLIVLMMTL IQDRREAMYALGAFVLAQLFLMLSSWMLFIHLPVPWATSRMALKEFAVFSSYLDQGIIGAVLAAICWHLRHLAPGRFGPH FAVLAALAYLCNVLFVLNGRSGHLVAIAMLSLAIMWELPKRYRAAVVLLPFVLVGALFLSSHKVRDRLIMMKMEVESHSA HAQPNTSSGLRLHFWMNSIQMIARHPVAGSGVGSWSTEYNRIQRDLDPAHKDIAGNFNPHQEFLLWAVQLGIPGLLLLCG LMLAMIRDSWTMEKPYARVVQSTVVALAVACLFNASIYDALIGDFFAVTLGLLLALGLTANASKPSAMSAQPGAI
Specific function: Unknown
COG id: COG3307
COG function: function code M; Lipid A core - O-antigen ligase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43359; Mature: 43228
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVISISKLLLFIFAAATLLFFERRSVGSPALARTYTPTAVLVVLLAFTISLFWTTAPSA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCH DAMGSIAKYGKLLLIVLMMTLIQDRREAMYALGAFVLAQLFLMLSSWMLFIHLPVPWATS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH RMALKEFAVFSSYLDQGIIGAVLAAICWHLRHLAPGRFGPHFAVLAALAYLCNVLFVLNG HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC RSGHLVAIAMLSLAIMWELPKRYRAAVVLLPFVLVGALFLSSHKVRDRLIMMKMEVESHS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCC AHAQPNTSSGLRLHFWMNSIQMIARHPVAGSGVGSWSTEYNRIQRDLDPAHKDIAGNFNP CCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCC HQEFLLWAVQLGIPGLLLLCGLMLAMIRDSWTMEKPYARVVQSTVVALAVACLFNASIYD HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ALIGDFFAVTLGLLLALGLTANASKPSAMSAQPGAI HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AVISISKLLLFIFAAATLLFFERRSVGSPALARTYTPTAVLVVLLAFTISLFWTTAPSA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCH DAMGSIAKYGKLLLIVLMMTLIQDRREAMYALGAFVLAQLFLMLSSWMLFIHLPVPWATS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH RMALKEFAVFSSYLDQGIIGAVLAAICWHLRHLAPGRFGPHFAVLAALAYLCNVLFVLNG HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC RSGHLVAIAMLSLAIMWELPKRYRAAVVLLPFVLVGALFLSSHKVRDRLIMMKMEVESHS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCC AHAQPNTSSGLRLHFWMNSIQMIARHPVAGSGVGSWSTEYNRIQRDLDPAHKDIAGNFNP CCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCC HQEFLLWAVQLGIPGLLLLCGLMLAMIRDSWTMEKPYARVVQSTVVALAVACLFNASIYD HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ALIGDFFAVTLGLLLALGLTANASKPSAMSAQPGAI HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA