| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787818
Identifier: 91787818
GI number: 91787818
Start: 2002112
End: 2003467
Strand: Direct
Name: 91787818
Synonym: Bpro_1941
Alternate gene names: NA
Gene position: 2002112-2003467 (Clockwise)
Preceding gene: 91787817
Following gene: 91787819
Centisome position: 38.5
GC content: 51.47
Gene sequence:
>1356_bases ATGAGTTCTGACGTTTCTTGGCAACGACAGACGTTGAAGGCGGCGGGAATTAGCCTGATTGACTGTGACCACCGCACGCC ACCAGCCGCAAATGAAGGCTACCCATATATCGCCATACCTCAGTTAAAGAACGGGCATGTTTCATTGGATGGCGTCCGAC GTATTTCTCCGGAGGACTATCTGGAGTGGACCAAGAAGCTCAAGCCTCAAACGCATGACGTAATTGTTGTTCGGCGATGC AATTCCGGAGATAGTGCGCTTATCCCGCCGGGCCTTGAATGCGCTATTGGTCAAAACCTTGTCATTCTTCGTTCAGATGG AAAAACCGTCCAACCACAGTTTCTGAGGTGGCTTCTCAATGGGCCAGATTGGTGGGAACAGGTCTCGAAATTTATTAACG TTGGCGCTGTTTTTGATAGTCTGCGTTGTAGAGACATTCCTAACTTTGAGCTGACCATCCCGCCGATAGACGATCAGCGA GAAATCGCAATCGTGTTGGATGCCCTCGACGACCGCATCGCTCTCCTACGCGAAATCAACACCACGCTTGAAGCCATCGC CCAGGCGCTGTTCAAGTCGTGGTTTGTCGATTTCGACCCCGTGCGCGCCAAGATGGAAGGCCGCGTCCCCGAAGGCATGG ACGAAGCCACAGCGGCGCTATTTCCAGATGGGTTTGAGGAGTCAGAGCTGGGGCTGGTGCCGCGAGGATGGACGGTGGAC AGGCTTGATACCTGGCTGAGTGTTCTTGAAACAGGACGGCGACCGAAGGGCGGTGTTGGCGGCATTTCCGACGGCGTACC AAGTATTGGGGCTGAAAGTATTGTGCGTATCGGTCAGTTTGACTTTGGGAAAACCAAGTATGTGTCGCATGATTTTTTTG CCAACATGAAGTCAGGCGCTTTGATTTCTCACGATGTCTTGCTGTACAAAGATGGTGGTAAGCCGGGTGTTTTTTTGCCA CGTGTCTCAATGTTTGGTGATGATTTTCCGTTTGAAAGGTGTGGCATTAATGAGCATGTTTTTAGGATGAGACTCAAGGC ACCTTTCAATCAACCATTTCTATATTTTTGGCTTTGGAGTGATGCCGTAATGCATGAATTGAAGCATCGGGGGGGGAAGG CGGCAATTCCAGGAATCAACCAGTCTGATGTAAGGGAGCAGGAGCTTTCAGTTCCAAATGCGTCTGTTTTGAACCGATTC GACGAACTAGTTTCTCCATTGGTCGGCCGGATATTCAGCAATGCAAAGCAAGCCCAAACCCTCGCCACCCTCCGCGACAC GTTGCTCCCACGCCTGATCTCCGGGCAGTTGCGGCTACTGGAAGTTGAAGACGACATAGTTACTGCTGCCGCCTGA
Upstream 100 bases:
>100_bases GCCACCAAGATGCAGCAGCTCACTGAAAAGCTGGGTGAGCAGATGGCGAAGGGGGCGGAACTGGATCAGTTGATTCGGCA AAAGCTGGGGGGGCTGGGGT
Downstream 100 bases:
>100_bases ACACCCAGGGTTTACACGGCTCTTCGCTCAACAATAATCTGAACATGAGTCAACGCCCCCGCACCATTCAAATTTTTCTG CCAGCGGGCGATCCGCGAGG
Product: restriction endonuclease S subunits-like protein protein
Products: NA
Alternate protein names: S.MjaXP; Type I restriction enzyme MjaXP specificity protein; S protein [H]
Number of amino acids: Translated: 451; Mature: 450
Protein sequence:
>451_residues MSSDVSWQRQTLKAAGISLIDCDHRTPPAANEGYPYIAIPQLKNGHVSLDGVRRISPEDYLEWTKKLKPQTHDVIVVRRC NSGDSALIPPGLECAIGQNLVILRSDGKTVQPQFLRWLLNGPDWWEQVSKFINVGAVFDSLRCRDIPNFELTIPPIDDQR EIAIVLDALDDRIALLREINTTLEAIAQALFKSWFVDFDPVRAKMEGRVPEGMDEATAALFPDGFEESELGLVPRGWTVD RLDTWLSVLETGRRPKGGVGGISDGVPSIGAESIVRIGQFDFGKTKYVSHDFFANMKSGALISHDVLLYKDGGKPGVFLP RVSMFGDDFPFERCGINEHVFRMRLKAPFNQPFLYFWLWSDAVMHELKHRGGKAAIPGINQSDVREQELSVPNASVLNRF DELVSPLVGRIFSNAKQAQTLATLRDTLLPRLISGQLRLLEVEDDIVTAAA
Sequences:
>Translated_451_residues MSSDVSWQRQTLKAAGISLIDCDHRTPPAANEGYPYIAIPQLKNGHVSLDGVRRISPEDYLEWTKKLKPQTHDVIVVRRC NSGDSALIPPGLECAIGQNLVILRSDGKTVQPQFLRWLLNGPDWWEQVSKFINVGAVFDSLRCRDIPNFELTIPPIDDQR EIAIVLDALDDRIALLREINTTLEAIAQALFKSWFVDFDPVRAKMEGRVPEGMDEATAALFPDGFEESELGLVPRGWTVD RLDTWLSVLETGRRPKGGVGGISDGVPSIGAESIVRIGQFDFGKTKYVSHDFFANMKSGALISHDVLLYKDGGKPGVFLP RVSMFGDDFPFERCGINEHVFRMRLKAPFNQPFLYFWLWSDAVMHELKHRGGKAAIPGINQSDVREQELSVPNASVLNRF DELVSPLVGRIFSNAKQAQTLATLRDTLLPRLISGQLRLLEVEDDIVTAAA >Mature_450_residues SSDVSWQRQTLKAAGISLIDCDHRTPPAANEGYPYIAIPQLKNGHVSLDGVRRISPEDYLEWTKKLKPQTHDVIVVRRCN SGDSALIPPGLECAIGQNLVILRSDGKTVQPQFLRWLLNGPDWWEQVSKFINVGAVFDSLRCRDIPNFELTIPPIDDQRE IAIVLDALDDRIALLREINTTLEAIAQALFKSWFVDFDPVRAKMEGRVPEGMDEATAALFPDGFEESELGLVPRGWTVDR LDTWLSVLETGRRPKGGVGGISDGVPSIGAESIVRIGQFDFGKTKYVSHDFFANMKSGALISHDVLLYKDGGKPGVFLPR VSMFGDDFPFERCGINEHVFRMRLKAPFNQPFLYFWLWSDAVMHELKHRGGKAAIPGINQSDVREQELSVPNASVLNRFD ELVSPLVGRIFSNAKQAQTLATLRDTLLPRLISGQLRLLEVEDDIVTAAA
Specific function: The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of bipartite DNA recognition sequence. Subunit S dictates DNA sequences specificity [H]
COG id: COG0732
COG function: function code V; Restriction endonuclease S subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type-I restriction system S methylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000055 [H]
Pfam domain/function: PF01420 Methylase_S [H]
EC number: NA
Molecular weight: Translated: 50317; Mature: 50186
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDVSWQRQTLKAAGISLIDCDHRTPPAANEGYPYIAIPQLKNGHVSLDGVRRISPEDY CCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCEEECCHHCCCHHHH LEWTKKLKPQTHDVIVVRRCNSGDSALIPPGLECAIGQNLVILRSDGKTVQPQFLRWLLN HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCCCHHHHHHHHC GPDWWEQVSKFINVGAVFDSLRCRDIPNFELTIPPIDDQREIAIVLDALDDRIALLREIN CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEHHHHHHHHHHHHH TTLEAIAQALFKSWFVDFDPVRAKMEGRVPEGMDEATAALFPDGFEESELGLVPRGWTVD HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH RLDTWLSVLETGRRPKGGVGGISDGVPSIGAESIVRIGQFDFGKTKYVSHDFFANMKSGA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEECHHHHHCCCCCC LISHDVLLYKDGGKPGVFLPRVSMFGDDFPFERCGINEHVFRMRLKAPFNQPFLYFWLWS EEECEEEEEECCCCCCEEECCHHHCCCCCCHHHCCCCHHHHHEEECCCCCCCEEEEEEHH DAVMHELKHRGGKAAIPGINQSDVREQELSVPNASVLNRFDELVSPLVGRIFSNAKQAQT HHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LATLRDTLLPRLISGQLRLLEVEDDIVTAAA HHHHHHHHHHHHHCCCEEEEEECCCCCCCCC >Mature Secondary Structure SSDVSWQRQTLKAAGISLIDCDHRTPPAANEGYPYIAIPQLKNGHVSLDGVRRISPEDY CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCEEECCHHCCCHHHH LEWTKKLKPQTHDVIVVRRCNSGDSALIPPGLECAIGQNLVILRSDGKTVQPQFLRWLLN HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCCCHHHHHHHHC GPDWWEQVSKFINVGAVFDSLRCRDIPNFELTIPPIDDQREIAIVLDALDDRIALLREIN CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEHHHHHHHHHHHHH TTLEAIAQALFKSWFVDFDPVRAKMEGRVPEGMDEATAALFPDGFEESELGLVPRGWTVD HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH RLDTWLSVLETGRRPKGGVGGISDGVPSIGAESIVRIGQFDFGKTKYVSHDFFANMKSGA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEECHHHHHCCCCCC LISHDVLLYKDGGKPGVFLPRVSMFGDDFPFERCGINEHVFRMRLKAPFNQPFLYFWLWS EEECEEEEEECCCCCCEEECCHHHCCCCCCHHHCCCCHHHHHEEECCCCCCCEEEEEEHH DAVMHELKHRGGKAAIPGINQSDVREQELSVPNASVLNRFDELVSPLVGRIFSNAKQAQT HHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LATLRDTLLPRLISGQLRLLEVEDDIVTAAA HHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]