Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is pld [H]

Identifier: 91787807

GI number: 91787807

Start: 1989703

End: 1990245

Strand: Direct

Name: pld [H]

Synonym: Bpro_1930

Alternate gene names: 91787807

Gene position: 1989703-1990245 (Clockwise)

Preceding gene: 91787806

Following gene: 91787808

Centisome position: 38.26

GC content: 56.17

Gene sequence:

>543_bases
ATGCGCCTGCGCCTCCTCTTCGTTCTCGCCCTTGCCGTGCCGGCCGGTTGCGCGATCCAGCCGCCCGCCGTTATTCCAAC
TGCGCAAATCGAAGTCACATTTTCACCGGAGGCGGGCTCAGAAAAGCTGGTTCTAAAGGTCATTGGCAGCGCACGTCAGT
CCATACGTTTGGCTGGTTATTCATTCACCTCTCCGGTGGTGGTCCGTGGCTTGATTGAGGCGAAGCGTCGAGGCGTTGAC
GTGAGGGTTCTGGTTGACGATAGAGGCAACCGGAGCCAGGCCAGCATCGCCGCGCTTAACCTGCTCCTTGGCGCAGAAAT
ACCAACTCGGGTGATCTCGACCTATGCGATTCACCACGATAAGTACATCGTCGTCGATGGCAGGCATACGCAGACGGGCT
CATTTAATTACAGCCAGGCGGCGGCAAAGTCCAACTCCGAAAACGTCTTGACAGTTTGGGACAACCCCAGCGTCGCCAGC
CTATATCTTGCTCATTGGGAAAGCAGATGGGCTCAAGGTATTCTGATTGACCGGAAATACTAG

Upstream 100 bases:

>100_bases
TGATGCGCAGGCGCGATGAGCGTTTCAAAAACCAGGGCAAGTACAAGGGGCTGCCTGATCCGCTTTACGACAAGGGCGAG
TCCACCCACTGTGCAAACTG

Downstream 100 bases:

>100_bases
CTCCAACGGGTGATGAATTAATGGAATTCTGGGCCTGCCAAGCTACCATGGGAACTGCCGCCGGTTAGCGCTCGACCCAA
CGGGGTAGGTCGGCGCTAAA

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: PLD; Choline phosphatase [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGYSFTSPVVVRGLIEAKRRGVD
VRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHDKYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVAS
LYLAHWESRWAQGILIDRKY

Sequences:

>Translated_180_residues
MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGYSFTSPVVVRGLIEAKRRGVD
VRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHDKYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVAS
LYLAHWESRWAQGILIDRKY
>Mature_180_residues
MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGYSFTSPVVVRGLIEAKRRGVD
VRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHDKYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVAS
LYLAHWESRWAQGILIDRKY

Specific function: Could be a virulence factor [H]

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PLD phosphodiesterase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: =3.1.4.4 [H]

Molecular weight: Translated: 19665; Mature: 19665

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGY
CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEHHHHHHEEEEECC
SFTSPVVVRGLIEAKRRGVDVRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHD
CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHEEEEECC
KYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVASLYLAHWESRWAQGILIDRKY
CEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEECC
>Mature Secondary Structure
MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGY
CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEHHHHHHEEEEECC
SFTSPVVVRGLIEAKRRGVDVRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHD
CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHEEEEECC
KYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVASLYLAHWESRWAQGILIDRKY
CEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA