| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787806
Identifier: 91787806
GI number: 91787806
Start: 1988642
End: 1989703
Strand: Direct
Name: 91787806
Synonym: Bpro_1929
Alternate gene names: NA
Gene position: 1988642-1989703 (Clockwise)
Preceding gene: 91787805
Following gene: 91787807
Centisome position: 38.24
GC content: 62.15
Gene sequence:
>1062_bases ATGGCCCGCTACAGACCGGTTGACCGCTCGCCCAGGTTCATCCCCGTTGTGCTGGATGCGCAAATCCAGCCCGGCAGCTT TGAGTACGCACTGGACTACCTGGTCGATCACGAGCTTGATCTGTCTGCCCTGCACGTGCGTTACAGTAACGACGCCACCG GCGCGCCCGCTTATGACCCGGCAGTCCTCCTCAAGATAGTCCTGCTGGCCTACAGCCGGGGCCTCGTCTCCAGCCGCAGC ATCGAGCGCGCCTGCCGCGAGAATGTCCTCTTCATGGCCCTGTCGGGAGACAGCGCACCCCAGTTCACCACCATCGCCAG ATTCATCCGCGAGTTGGCCCCCCAGATTCAGGCCCTGTTCACCCAGGTGCTGCTCACCTGCGAGGCCCAGGGCCTGATTG GCCGGCAGATGTTCGCCATCGACGGCGTCAAACTTTCCAGCAACGCCAGCAAAGAGCGCAGCGGCAGCTTTGCCGAATTG GCCCACCAGGCTGACCGCATGGAGCGTGCAGTAAAGAAGATGATTGCAGCCCATCAAAACCGTGACAGCACCAGCGTTGA CGAAGACGATGTGGGGATAAATACCCAGCGCATGACCTGCCTGCAAACCGAAGCTGCCCGCATCCGCGACTTCCTGGTGC GCCACACCGAGCGCAAAAGCGGCAAAGGCGCTATCCGCAAAAGCAACGTCACCGACAACGACAGCGCCAAGATGGCCACG GCCAAAGGCGTGATCCAGGGCTACACGGCAGTTGCGGCCGTAGACAGCACCCACCAGGTCATCGTGGCGGCCCAGGCCCA CGGCTCAGGCTCCGAGCAAAGCACACTGCTGCCCACCGTAGCGCAAACCGATGCGGTGCGCAGCCCCAACACCCTGATCA CGGCAGATGCGGGCTATCACAGCGAAGCCAATCTCAAAGCCCTGGATGACCAGGGCATACCGGCCCTGGTGGCCGATGGC CTGATGCGCAGGCGCGATGAGCGTTTCAAAAACCAGGGCAAGTACAAGGGGCTGCCTGATCCGCTTTACGACAAGGGCGA GTCCACCCACTGTGCAAACTGA
Upstream 100 bases:
>100_bases CGCTGATGGGCAACGTTGAGGCTGTATTTTTAGTCCCGCCAGGGCGTTGATCTGGCGCGCGACTTGCATGTCCTGATGCA CCCAAGCTCAGGACATCGCC
Downstream 100 bases:
>100_bases TGCGCCTGCGCCTCCTCTTCGTTCTCGCCCTTGCCGTGCCGGCCGGTTGCGCGATCCAGCCGCCCGCCGTTATTCCAACT GCGCAAATCGAAGTCACATT
Product: IS4 family transposase
Products: NA
Alternate protein names: Transposase; IS4 Family Transposase; ISPsy6 Transposase; Transposase IS4 Family; Transposase Is4 Family Protein; ISCps6 Transposase; Transposase Is4 Family; ISNCY Family Transposase; ISCpe5 Transposase; ISPpu20 Transposase
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MARYRPVDRSPRFIPVVLDAQIQPGSFEYALDYLVDHELDLSALHVRYSNDATGAPAYDPAVLLKIVLLAYSRGLVSSRS IERACRENVLFMALSGDSAPQFTTIARFIRELAPQIQALFTQVLLTCEAQGLIGRQMFAIDGVKLSSNASKERSGSFAEL AHQADRMERAVKKMIAAHQNRDSTSVDEDDVGINTQRMTCLQTEAARIRDFLVRHTERKSGKGAIRKSNVTDNDSAKMAT AKGVIQGYTAVAAVDSTHQVIVAAQAHGSGSEQSTLLPTVAQTDAVRSPNTLITADAGYHSEANLKALDDQGIPALVADG LMRRRDERFKNQGKYKGLPDPLYDKGESTHCAN
Sequences:
>Translated_353_residues MARYRPVDRSPRFIPVVLDAQIQPGSFEYALDYLVDHELDLSALHVRYSNDATGAPAYDPAVLLKIVLLAYSRGLVSSRS IERACRENVLFMALSGDSAPQFTTIARFIRELAPQIQALFTQVLLTCEAQGLIGRQMFAIDGVKLSSNASKERSGSFAEL AHQADRMERAVKKMIAAHQNRDSTSVDEDDVGINTQRMTCLQTEAARIRDFLVRHTERKSGKGAIRKSNVTDNDSAKMAT AKGVIQGYTAVAAVDSTHQVIVAAQAHGSGSEQSTLLPTVAQTDAVRSPNTLITADAGYHSEANLKALDDQGIPALVADG LMRRRDERFKNQGKYKGLPDPLYDKGESTHCAN >Mature_352_residues ARYRPVDRSPRFIPVVLDAQIQPGSFEYALDYLVDHELDLSALHVRYSNDATGAPAYDPAVLLKIVLLAYSRGLVSSRSI ERACRENVLFMALSGDSAPQFTTIARFIRELAPQIQALFTQVLLTCEAQGLIGRQMFAIDGVKLSSNASKERSGSFAELA HQADRMERAVKKMIAAHQNRDSTSVDEDDVGINTQRMTCLQTEAARIRDFLVRHTERKSGKGAIRKSNVTDNDSAKMATA KGVIQGYTAVAAVDSTHQVIVAAQAHGSGSEQSTLLPTVAQTDAVRSPNTLITADAGYHSEANLKALDDQGIPALVADGL MRRRDERFKNQGKYKGLPDPLYDKGESTHCAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38549; Mature: 38418
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYRPVDRSPRFIPVVLDAQIQPGSFEYALDYLVDHELDLSALHVRYSNDATGAPAYDP CCCCCCCCCCCCEEEEEEECEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH AVLLKIVLLAYSRGLVSSRSIERACRENVLFMALSGDSAPQFTTIARFIRELAPQIQALF HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH TQVLLTCEAQGLIGRQMFAIDGVKLSSNASKERSGSFAELAHQADRMERAVKKMIAAHQN HHHHHHHCCCCCCCCEEEEECCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC RDSTSVDEDDVGINTQRMTCLQTEAARIRDFLVRHTERKSGKGAIRKSNVTDNDSAKMAT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHH AKGVIQGYTAVAAVDSTHQVIVAAQAHGSGSEQSTLLPTVAQTDAVRSPNTLITADAGYH HHHHHHHHHHEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCC SEANLKALDDQGIPALVADGLMRRRDERFKNQGKYKGLPDPLYDKGESTHCAN CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure ARYRPVDRSPRFIPVVLDAQIQPGSFEYALDYLVDHELDLSALHVRYSNDATGAPAYDP CCCCCCCCCCCEEEEEEECEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH AVLLKIVLLAYSRGLVSSRSIERACRENVLFMALSGDSAPQFTTIARFIRELAPQIQALF HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH TQVLLTCEAQGLIGRQMFAIDGVKLSSNASKERSGSFAELAHQADRMERAVKKMIAAHQN HHHHHHHCCCCCCCCEEEEECCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC RDSTSVDEDDVGINTQRMTCLQTEAARIRDFLVRHTERKSGKGAIRKSNVTDNDSAKMAT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHH AKGVIQGYTAVAAVDSTHQVIVAAQAHGSGSEQSTLLPTVAQTDAVRSPNTLITADAGYH HHHHHHHHHHEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCC SEANLKALDDQGIPALVADGLMRRRDERFKNQGKYKGLPDPLYDKGESTHCAN CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA