| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ytfF [H]
Identifier: 91787776
GI number: 91787776
Start: 1960636
End: 1961568
Strand: Direct
Name: ytfF [H]
Synonym: Bpro_1897
Alternate gene names: 91787776
Gene position: 1960636-1961568 (Clockwise)
Preceding gene: 91787775
Following gene: 91787777
Centisome position: 37.7
GC content: 66.99
Gene sequence:
>933_bases ATGACGGCTTTGCGACCTGAGCATTCGCGAATGACGGGCGGCATTCTGGCCGGCCTGCTGGCGGGCGCACTGTGGGGGCT GGTGTTTGTCGTGCCGCGCATGTTGCCCGTGGGGCCCGGGGCCTACTCGTCGGTGGACCTGACGGCCGGGCGTTTTGCGG CGTATGGTGTGGTGGCCGCTGCGGTGATGCTGCTGGGCCGGCGTAACCGGCGCCTGCCCACGATGCGGCAGGCCTGGGCC GCCCTGTTCATGAGCGTGCTGGGCTTCACCGCCTACTACCTGCTGCTGGTGCTGGCCATTCGCGATGCCGGCACCGAGGT GCCCACGCTGATCATCGGCACGATTCCCGTGTGGGTGATGCTGCTCGGCAAACCGCACGGCCTGCGCTGGGCAGCACTGG TGCCCGGGCTGGCGCTCACGCTGGCCGGCCTGCTGCTCATGATGGGCTCCACGCACGCGGCGGGCGACGCGTCCGCCACG CAGTTCTGGCGCGGTGTTGTGCTGGCGGCGGCGTCGCTGGTGTGCTGGACGGTGTTCGCGATTGTCAATTCCGCATGGCT CAAGCGGCATCCCGAGGTCAACGCCACAGACTGGGCCAACTGGCTGGGCGTGGCCACCGGCCTGGGCGCTGTGCTGATGT GGCTGGTGGCAGGCTCTGATGCGGGCGTGCTGATGGTGCGCGAAGACCGGACCCTCTTTATCGTCCTGTGCGTGTTGGCC GGGTTCGGCTCCACCTGGCTGGCCACCATTTTCTGGAACATCGCCAGCCAGCGGCTCAGCGCCAGCCTGTGCGGTCAACT CATCGTCAGTGAAACCATTTTTGCCCTGCTGTATTCTTTTGTCTGGGATGGCCGCTGGCCCACAGCAGCACAGCTCATCG CCTGCGTGCTGTTCACGCTGGGGATTCTTGCCTCCATCCGGGCTCACCGCTGA
Upstream 100 bases:
>100_bases CCGCGCAAGCGCATCGGCAAGCCGGAAGACCTGGACGCGCTGCTGGTGATGCTGGCCAGCCGGGAAAGCCATTTCGTCAA CGGAGCGGTGATTGCGGCAG
Downstream 100 bases:
>100_bases ATCATTTCCCGAGCTTCCAAAATTTCCCAAACTTTCCAACATGAAAATTGAAATTCCCGAGAAGAAAAAGCTGGTGCGTG AAATGCACATTCCGATTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MTALRPEHSRMTGGILAGLLAGALWGLVFVVPRMLPVGPGAYSSVDLTAGRFAAYGVVAAAVMLLGRRNRRLPTMRQAWA ALFMSVLGFTAYYLLLVLAIRDAGTEVPTLIIGTIPVWVMLLGKPHGLRWAALVPGLALTLAGLLLMMGSTHAAGDASAT QFWRGVVLAAASLVCWTVFAIVNSAWLKRHPEVNATDWANWLGVATGLGAVLMWLVAGSDAGVLMVREDRTLFIVLCVLA GFGSTWLATIFWNIASQRLSASLCGQLIVSETIFALLYSFVWDGRWPTAAQLIACVLFTLGILASIRAHR
Sequences:
>Translated_310_residues MTALRPEHSRMTGGILAGLLAGALWGLVFVVPRMLPVGPGAYSSVDLTAGRFAAYGVVAAAVMLLGRRNRRLPTMRQAWA ALFMSVLGFTAYYLLLVLAIRDAGTEVPTLIIGTIPVWVMLLGKPHGLRWAALVPGLALTLAGLLLMMGSTHAAGDASAT QFWRGVVLAAASLVCWTVFAIVNSAWLKRHPEVNATDWANWLGVATGLGAVLMWLVAGSDAGVLMVREDRTLFIVLCVLA GFGSTWLATIFWNIASQRLSASLCGQLIVSETIFALLYSFVWDGRWPTAAQLIACVLFTLGILASIRAHR >Mature_309_residues TALRPEHSRMTGGILAGLLAGALWGLVFVVPRMLPVGPGAYSSVDLTAGRFAAYGVVAAAVMLLGRRNRRLPTMRQAWAA LFMSVLGFTAYYLLLVLAIRDAGTEVPTLIIGTIPVWVMLLGKPHGLRWAALVPGLALTLAGLLLMMGSTHAAGDASATQ FWRGVVLAAASLVCWTVFAIVNSAWLKRHPEVNATDWANWLGVATGLGAVLMWLVAGSDAGVLMVREDRTLFIVLCVLAG FGSTWLATIFWNIASQRLSASLCGQLIVSETIFALLYSFVWDGRWPTAAQLIACVLFTLGILASIRAHR
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DUF6 domain [H]
Homologues:
Organism=Escherichia coli, GI226510990, Length=313, Percent_Identity=32.2683706070287, Blast_Score=133, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33203; Mature: 33072
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALRPEHSRMTGGILAGLLAGALWGLVFVVPRMLPVGPGAYSSVDLTAGRFAAYGVVAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH AVMLLGRRNRRLPTMRQAWAALFMSVLGFTAYYLLLVLAIRDAGTEVPTLIIGTIPVWVM HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LLGKPHGLRWAALVPGLALTLAGLLLMMGSTHAAGDASATQFWRGVVLAAASLVCWTVFA HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IVNSAWLKRHPEVNATDWANWLGVATGLGAVLMWLVAGSDAGVLMVREDRTLFIVLCVLA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH GFGSTWLATIFWNIASQRLSASLCGQLIVSETIFALLYSFVWDGRWPTAAQLIACVLFTL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH GILASIRAHR HHHHHHHCCC >Mature Secondary Structure TALRPEHSRMTGGILAGLLAGALWGLVFVVPRMLPVGPGAYSSVDLTAGRFAAYGVVAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH AVMLLGRRNRRLPTMRQAWAALFMSVLGFTAYYLLLVLAIRDAGTEVPTLIIGTIPVWVM HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LLGKPHGLRWAALVPGLALTLAGLLLMMGSTHAAGDASATQFWRGVVLAAASLVCWTVFA HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IVNSAWLKRHPEVNATDWANWLGVATGLGAVLMWLVAGSDAGVLMVREDRTLFIVLCVLA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH GFGSTWLATIFWNIASQRLSASLCGQLIVSETIFALLYSFVWDGRWPTAAQLIACVLFTL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH GILASIRAHR HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]