Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yiaO [C]

Identifier: 91787632

GI number: 91787632

Start: 1811420

End: 1812499

Strand: Direct

Name: yiaO [C]

Synonym: Bpro_1750

Alternate gene names: 91787632

Gene position: 1811420-1812499 (Clockwise)

Preceding gene: 91787631

Following gene: 91787638

Centisome position: 34.83

GC content: 60.19

Gene sequence:

>1080_bases
ATGGATCGTCGCTCACTCATCAAAAACGCTGGTATCGCCGGTGTGCTGGCAGCCGGCGCCGCACCCGCGGTGCACGCGCA
GGCCGCCATTCGCTGGCGCCTGGCTTCGAGCTTCCCGAAGTCCCTGGACACGCTGTTCGGCGGCGCCGAGACCTTTGCCA
AAGCCGTGCGCACCATGTCCGGCGGCAAGTTTGAAATCTCCACCCACGCCGCCGGCGAGCTGATGCCTGCTTTTGGCGTG
GTGGATGGCGTGCAGCAGGGTTCGGTGGAAATGGCCCAAACCGCGCCTTATTACTTTTTCGGCAAGGACGAAACCTTCAC
GCTGGGTTGCGCGATTCCCTTTGGTCTGAACAGCCGCCAGCTCACAGCCTGGATGTACGAAGGCAACGGCCTGAAGCTGA
TGCGTGAGTTCTACGCCAAATACAACATCGTCAATTTCCCCGGCGGCAATACCGGCGCCCAGATGGGCGGCTGGTTCCGC
AAGGAGGTCAAGAGTGTCAAGGACCTGAAGGGCCTGAAGTTCCGCATCGGCGGCTTCGCCGGCAAGGTCATGGAGCGCAT
GGGTGTGGTGCCGCAGAACATTCCGGGCGGTGAAATCTACACCTCGCTTGAAAAGGGCACCATTGACGCGGCCGAATGGG
TCGGCCCCTACGATGACCAGAAGCTAGGCTTTGTGAAGGTCGCCCCGTTCTACTACTATCCCGGTTTCTGGGAAGGCTCT
GCGCAACTGGATTTCTTCATCAACCAGAAGGCCTGGGACAGCCTGTCGGCCGAAAACAAGGGCATTGTCGAGGCCGCGTG
CTCGCAGGCCCACGTTGACATCCAGGCCAAGTACGACGCCCGCAATCCGCTTGCGCTGAAACAGCTGGTCGCCAGTGGCG
CCAAGTTGCGGCCCTTCCCGACCGATATGATGAACGAGGCGTTCAAGCATTCCATGGCGATCTACCAGGAAACCTCGGCC
AAGAACGAGAGCTTCAAGAAGATTTACGCCGACCTGTCCAAGTTCCGTGCTGACCAGAACCTGTGGTTCCGCTTCACGGA
AGGCACCTTCGACCGCTTCATGCAGGCGCAAAAGCTCTGA

Upstream 100 bases:

>100_bases
AAAGCGGGTCATGAATCCGCGTGATTTCTATCGGGTGAGGCGGAAATGAGGCAGAAAAAACTGTTTTATTGTTAGTTGAC
ACATTCCCCAGGAGTACAAA

Downstream 100 bases:

>100_bases
GGCTTTCCCGCTCGCCCTCCCGCAAGTCAAGGCCGCCTTCGGGCGGCTTTTTCATGGGCGGTTGCGGAATGCCTTGAGTT
CTGCAATCAGGCGTTCGAAC

Product: twin-arginine translocation pathway signal protein

Products: NA

Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Periplasmic TRAP-Type Dicarboxylate Transporter Protein; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; C4-Dicarboxylate Transporter; TRAP Transporter; Tat Pathway Signal Sequence Domain-Containing; TRAP Dicarboxylate Transporter; TRAP Dicarboxylate Transporter- Dctp Subunit; Trap Transporter Dctp Subunit Containing Protein

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMSGGKFEISTHAAGELMPAFGV
VDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQLTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFR
KEVKSVKDLKGLKFRIGGFAGKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS
AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFPTDMMNEAFKHSMAIYQETSA
KNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL

Sequences:

>Translated_359_residues
MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMSGGKFEISTHAAGELMPAFGV
VDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQLTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFR
KEVKSVKDLKGLKFRIGGFAGKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS
AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFPTDMMNEAFKHSMAIYQETSA
KNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL
>Mature_359_residues
MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMSGGKFEISTHAAGELMPAFGV
VDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQLTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFR
KEVKSVKDLKGLKFRIGGFAGKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS
AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFPTDMMNEAFKHSMAIYQETSA
KNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL

Specific function: Unknown

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39646; Mature: 39646

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMS
CCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCC
GGKFEISTHAAGELMPAFGVVDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQ
CCEEEEECCCCCHHHHHHHHHHCCCCCCEEHHHCCCEEEECCCCEEEEEEEEECCCCCCE
LTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFRKEVKSVKDLKGLKFRIGGFA
EEEEEEECCCHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHH
GKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS
HHHHHHHCCCCCCCCCCHHEEECCCCCCCHHHHCCCCCCCCCCEEEEECEEECCCEECCC
AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFP
CEEEEEECCHHHHCCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCC
TDMMNEAFKHSMAIYQETSAKNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMS
CCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCC
GGKFEISTHAAGELMPAFGVVDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQ
CCEEEEECCCCCHHHHHHHHHHCCCCCCEEHHHCCCEEEECCCCEEEEEEEEECCCCCCE
LTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFRKEVKSVKDLKGLKFRIGGFA
EEEEEEECCCHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHH
GKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS
HHHHHHHCCCCCCCCCCHHEEECCCCCCCHHHHCCCCCCCCCCEEEEECEEECCCEECCC
AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFP
CEEEEEECCHHHHCCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCC
TDMMNEAFKHSMAIYQETSAKNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA