| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yiaO [C]
Identifier: 91787632
GI number: 91787632
Start: 1811420
End: 1812499
Strand: Direct
Name: yiaO [C]
Synonym: Bpro_1750
Alternate gene names: 91787632
Gene position: 1811420-1812499 (Clockwise)
Preceding gene: 91787631
Following gene: 91787638
Centisome position: 34.83
GC content: 60.19
Gene sequence:
>1080_bases ATGGATCGTCGCTCACTCATCAAAAACGCTGGTATCGCCGGTGTGCTGGCAGCCGGCGCCGCACCCGCGGTGCACGCGCA GGCCGCCATTCGCTGGCGCCTGGCTTCGAGCTTCCCGAAGTCCCTGGACACGCTGTTCGGCGGCGCCGAGACCTTTGCCA AAGCCGTGCGCACCATGTCCGGCGGCAAGTTTGAAATCTCCACCCACGCCGCCGGCGAGCTGATGCCTGCTTTTGGCGTG GTGGATGGCGTGCAGCAGGGTTCGGTGGAAATGGCCCAAACCGCGCCTTATTACTTTTTCGGCAAGGACGAAACCTTCAC GCTGGGTTGCGCGATTCCCTTTGGTCTGAACAGCCGCCAGCTCACAGCCTGGATGTACGAAGGCAACGGCCTGAAGCTGA TGCGTGAGTTCTACGCCAAATACAACATCGTCAATTTCCCCGGCGGCAATACCGGCGCCCAGATGGGCGGCTGGTTCCGC AAGGAGGTCAAGAGTGTCAAGGACCTGAAGGGCCTGAAGTTCCGCATCGGCGGCTTCGCCGGCAAGGTCATGGAGCGCAT GGGTGTGGTGCCGCAGAACATTCCGGGCGGTGAAATCTACACCTCGCTTGAAAAGGGCACCATTGACGCGGCCGAATGGG TCGGCCCCTACGATGACCAGAAGCTAGGCTTTGTGAAGGTCGCCCCGTTCTACTACTATCCCGGTTTCTGGGAAGGCTCT GCGCAACTGGATTTCTTCATCAACCAGAAGGCCTGGGACAGCCTGTCGGCCGAAAACAAGGGCATTGTCGAGGCCGCGTG CTCGCAGGCCCACGTTGACATCCAGGCCAAGTACGACGCCCGCAATCCGCTTGCGCTGAAACAGCTGGTCGCCAGTGGCG CCAAGTTGCGGCCCTTCCCGACCGATATGATGAACGAGGCGTTCAAGCATTCCATGGCGATCTACCAGGAAACCTCGGCC AAGAACGAGAGCTTCAAGAAGATTTACGCCGACCTGTCCAAGTTCCGTGCTGACCAGAACCTGTGGTTCCGCTTCACGGA AGGCACCTTCGACCGCTTCATGCAGGCGCAAAAGCTCTGA
Upstream 100 bases:
>100_bases AAAGCGGGTCATGAATCCGCGTGATTTCTATCGGGTGAGGCGGAAATGAGGCAGAAAAAACTGTTTTATTGTTAGTTGAC ACATTCCCCAGGAGTACAAA
Downstream 100 bases:
>100_bases GGCTTTCCCGCTCGCCCTCCCGCAAGTCAAGGCCGCCTTCGGGCGGCTTTTTCATGGGCGGTTGCGGAATGCCTTGAGTT CTGCAATCAGGCGTTCGAAC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Periplasmic TRAP-Type Dicarboxylate Transporter Protein; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; C4-Dicarboxylate Transporter; TRAP Transporter; Tat Pathway Signal Sequence Domain-Containing; TRAP Dicarboxylate Transporter; TRAP Dicarboxylate Transporter- Dctp Subunit; Trap Transporter Dctp Subunit Containing Protein
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMSGGKFEISTHAAGELMPAFGV VDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQLTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFR KEVKSVKDLKGLKFRIGGFAGKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFPTDMMNEAFKHSMAIYQETSA KNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL
Sequences:
>Translated_359_residues MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMSGGKFEISTHAAGELMPAFGV VDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQLTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFR KEVKSVKDLKGLKFRIGGFAGKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFPTDMMNEAFKHSMAIYQETSA KNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL >Mature_359_residues MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMSGGKFEISTHAAGELMPAFGV VDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQLTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFR KEVKSVKDLKGLKFRIGGFAGKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFPTDMMNEAFKHSMAIYQETSA KNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL
Specific function: Unknown
COG id: COG4663
COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39646; Mature: 39646
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMS CCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCC GGKFEISTHAAGELMPAFGVVDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQ CCEEEEECCCCCHHHHHHHHHHCCCCCCEEHHHCCCEEEECCCCEEEEEEEEECCCCCCE LTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFRKEVKSVKDLKGLKFRIGGFA EEEEEEECCCHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHH GKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS HHHHHHHCCCCCCCCCCHHEEECCCCCCCHHHHCCCCCCCCCCEEEEECEEECCCEECCC AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFP CEEEEEECCHHHHCCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCC TDMMNEAFKHSMAIYQETSAKNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC >Mature Secondary Structure MDRRSLIKNAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTLFGGAETFAKAVRTMS CCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCC GGKFEISTHAAGELMPAFGVVDGVQQGSVEMAQTAPYYFFGKDETFTLGCAIPFGLNSRQ CCEEEEECCCCCHHHHHHHHHHCCCCCCEEHHHCCCEEEECCCCEEEEEEEEECCCCCCE LTAWMYEGNGLKLMREFYAKYNIVNFPGGNTGAQMGGWFRKEVKSVKDLKGLKFRIGGFA EEEEEEECCCHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHH GKVMERMGVVPQNIPGGEIYTSLEKGTIDAAEWVGPYDDQKLGFVKVAPFYYYPGFWEGS HHHHHHHCCCCCCCCCCHHEEECCCCCCCHHHHCCCCCCCCCCEEEEECEEECCCEECCC AQLDFFINQKAWDSLSAENKGIVEAACSQAHVDIQAKYDARNPLALKQLVASGAKLRPFP CEEEEEECCHHHHCCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCC TDMMNEAFKHSMAIYQETSAKNESFKKIYADLSKFRADQNLWFRFTEGTFDRFMQAQKL HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA