| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787603
Identifier: 91787603
GI number: 91787603
Start: 1774427
End: 1775833
Strand: Direct
Name: 91787603
Synonym: Bpro_1721
Alternate gene names: NA
Gene position: 1774427-1775833 (Clockwise)
Preceding gene: 91787598
Following gene: 91787604
Centisome position: 34.12
GC content: 68.8
Gene sequence:
>1407_bases ATGACGCGCGACCAATTACTCGAATCTGCCTCCGCCTGGTTTGACGCCGGGCATTTCCAGCGTGACCTGGCCCGCCGCGT GGCCTGGCGCACCGAGAGCGACGGCGGGCAGCCCGGCCCAGCCCTGGGCGACTACTTGCGCGATGACATCGTGCCATCCC TGATCCGGCTGGGCTTTGACTGCGAGGTGCAGGCCAACCCGGTGGCTACCGGTGGGCCGCTGCTGGTGGCGCGCCGCGTC GAGGGCCAGGACCTGCCTACCGTGCTGACCTACGGGCATGGCGACGTGGTCAACGGCCAGGACAAGCACTGGCGTGAAGG CCTGAGCCCGTGGCAATTGACCGTGGAGGGCGACCGCTGGTACGGCCGCGGCACGGCAGACAACAAGGGCCAGCACACCA TCAACTTCGCGGCGCTGGAGCACACCCTGGGCGCGCGTGGCGGCCGGCTGGGCTACAACGTGACGGTGCTGCTGGAAATG GGCGAGGAGGCGGGCAGTCCGGGCCTGCGTGAGCTGTGCGAGCGCGAACGCGAGCTGCTGCGCGCCGATTTGCTGATCGC CTGCGACGGGCCGCGCGTGCAGGCGCAGCAGCCCACCCTGTTCCTGGGCTCACGCGGGCTGGTCAATTTCTCGCTGCGCC TGCAAAGCCGCGAGCGCGCCTACCACTCGGGCAACTGGGGTGGCGTGTTGACCAACCCCGGCATCGTGCTGGCGCATGCC ATCGCATCCATGGTCGATGAACGGGGGCGTATCCAGGTCGATGGTTTGCGCCCACCGGCACTGGCGGACAACATCCGGCG CGCGCTGCGCGACGTGCAGGTCGGCGGCGGCACAGACGATCCGCAGATCAATCCCGCCTGGGGTGAGCCCGGCCTGACGG CGGCTGAACGCCTGGTTGGCTGGAACACGCTGGAAGTGCTGGCGCTGGGAGCTGGCTCGGCCGAGCGTCCGGTCAATGCG ATTCCACCTCAGGCGGTGGCGCACTGCCAGCTGCGCTTTGTGCCGGGTACGCCGTGGCAGCAGTTGCAGAGCATCGTGCG CGCCCATCTGGACGCGCACGGCTTTGACGCCGTGGAAGTGAGCGTTACCGCCGACTCGCCCGCCACGCGCCTGGATCTGG ACAACCCCTGGGTCGGCTGGGCCATGCAGTCCATGGCGATGAGCAGCGGCAAGCCCGTCACCCTGTTGCCCAATCTGGCC GGCTCGTTGCCCAACGACGTGTTTGCCGATGTGCTGGGCCTGCCCACGCTATGGGTGCCGCATTCCTATCCGGCCTGTGC CCAGCACGCGCCCAACGAACACCTGCTGGCGTCCGTCGCCAGCGAAGGCCTGCGCATCATGGCTGGACTGTACTGGGATC TGGGCGAGCCGGGCCTGCCCTGGCAGCGCAGTGCGCGTGCTCAATGA
Upstream 100 bases:
>100_bases CGTGCATTGCCGCCAACGCAAGGCTGAGTTGCTTATTCTCAAATTGTGAAAGCTTTTTGAGTTTATTAGACTTTTGGCAA TGCTCCAAGGATGCCAAAAC
Downstream 100 bases:
>100_bases GCCTCACGGAGCCCCTCGCTTGAGTTTTTTAACCTGAAAAGAGAACAGCATGACATCGACATCGACATCGACATCGACAT CGACATCGACATCACGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase; M20/M25/M40 Family Peptidase; Peptidase Family; Succinyl-Diaminopimelate Desuccinylase; Beta-Ala-His Dipeptidase; Peptidase Dimerisation Domain Protein; Peptidase Dimerisation Domain-Containing Protein; ArgE/DapE/Acy1 Family Protein; Deacylase; Peptidase Dimerization Domain Protein; N-Acyl-L-Amino Acid Amidohydrolase; Succinyl-Diaminopimelate Desuccinylase Protein; Peptidase Or Deacetlylase Family Protein; Desuccinylase Deacetylase Or Peptidase; Zinc Metallopeptidase; Acetylornithine Deacetylase ArgE; N-Succinyl-Diaminopimelate Deacylase; ArgE/DapE/Acy1 Family Peptidase; Nonspecific Dipeptidase; Acetylornithine Deacetylase
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MTRDQLLESASAWFDAGHFQRDLARRVAWRTESDGGQPGPALGDYLRDDIVPSLIRLGFDCEVQANPVATGGPLLVARRV EGQDLPTVLTYGHGDVVNGQDKHWREGLSPWQLTVEGDRWYGRGTADNKGQHTINFAALEHTLGARGGRLGYNVTVLLEM GEEAGSPGLRELCERERELLRADLLIACDGPRVQAQQPTLFLGSRGLVNFSLRLQSRERAYHSGNWGGVLTNPGIVLAHA IASMVDERGRIQVDGLRPPALADNIRRALRDVQVGGGTDDPQINPAWGEPGLTAAERLVGWNTLEVLALGAGSAERPVNA IPPQAVAHCQLRFVPGTPWQQLQSIVRAHLDAHGFDAVEVSVTADSPATRLDLDNPWVGWAMQSMAMSSGKPVTLLPNLA GSLPNDVFADVLGLPTLWVPHSYPACAQHAPNEHLLASVASEGLRIMAGLYWDLGEPGLPWQRSARAQ
Sequences:
>Translated_468_residues MTRDQLLESASAWFDAGHFQRDLARRVAWRTESDGGQPGPALGDYLRDDIVPSLIRLGFDCEVQANPVATGGPLLVARRV EGQDLPTVLTYGHGDVVNGQDKHWREGLSPWQLTVEGDRWYGRGTADNKGQHTINFAALEHTLGARGGRLGYNVTVLLEM GEEAGSPGLRELCERERELLRADLLIACDGPRVQAQQPTLFLGSRGLVNFSLRLQSRERAYHSGNWGGVLTNPGIVLAHA IASMVDERGRIQVDGLRPPALADNIRRALRDVQVGGGTDDPQINPAWGEPGLTAAERLVGWNTLEVLALGAGSAERPVNA IPPQAVAHCQLRFVPGTPWQQLQSIVRAHLDAHGFDAVEVSVTADSPATRLDLDNPWVGWAMQSMAMSSGKPVTLLPNLA GSLPNDVFADVLGLPTLWVPHSYPACAQHAPNEHLLASVASEGLRIMAGLYWDLGEPGLPWQRSARAQ >Mature_467_residues TRDQLLESASAWFDAGHFQRDLARRVAWRTESDGGQPGPALGDYLRDDIVPSLIRLGFDCEVQANPVATGGPLLVARRVE GQDLPTVLTYGHGDVVNGQDKHWREGLSPWQLTVEGDRWYGRGTADNKGQHTINFAALEHTLGARGGRLGYNVTVLLEMG EEAGSPGLRELCERERELLRADLLIACDGPRVQAQQPTLFLGSRGLVNFSLRLQSRERAYHSGNWGGVLTNPGIVLAHAI ASMVDERGRIQVDGLRPPALADNIRRALRDVQVGGGTDDPQINPAWGEPGLTAAERLVGWNTLEVLALGAGSAERPVNAI PPQAVAHCQLRFVPGTPWQQLQSIVRAHLDAHGFDAVEVSVTADSPATRLDLDNPWVGWAMQSMAMSSGKPVTLLPNLAG SLPNDVFADVLGLPTLWVPHSYPACAQHAPNEHLLASVASEGLRIMAGLYWDLGEPGLPWQRSARAQ
Specific function: Unknown
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21071039, Length=405, Percent_Identity=22.4691358024691, Blast_Score=89, Evalue=9e-18, Organism=Homo sapiens, GI271398239, Length=405, Percent_Identity=23.4567901234568, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17563146, Length=298, Percent_Identity=25.8389261744966, Blast_Score=81, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6321159, Length=424, Percent_Identity=25, Blast_Score=97, Evalue=8e-21, Organism=Saccharomyces cerevisiae, GI6319758, Length=392, Percent_Identity=23.2142857142857, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI24585880, Length=173, Percent_Identity=31.2138728323699, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50684; Mature: 50553
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRDQLLESASAWFDAGHFQRDLARRVAWRTESDGGQPGPALGDYLRDDIVPSLIRLGFD CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC CEVQANPVATGGPLLVARRVEGQDLPTVLTYGHGDVVNGQDKHWREGLSPWQLTVEGDRW CEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHCCCCCEEEEEECCCE YGRGTADNKGQHTINFAALEHTLGARGGRLGYNVTVLLEMGEEAGSPGLRELCERERELL ECCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH RADLLIACDGPRVQAQQPTLFLGSRGLVNFSLRLQSRERAYHSGNWGGVLTNPGIVLAHA HHCEEEEECCCCCCCCCCEEEECCCCEEEEEEEECHHHHHHHCCCCCCEECCCHHHHHHH IASMVDERGRIQVDGLRPPALADNIRRALRDVQVGGGTDDPQINPAWGEPGLTAAERLVG HHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHC WNTLEVLALGAGSAERPVNAIPPQAVAHCQLRFVPGTPWQQLQSIVRAHLDAHGFDAVEV CCEEEEEEECCCCCCCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE SVTADSPATRLDLDNPWVGWAMQSMAMSSGKPVTLLPNLAGSLPNDVFADVLGLPTLWVP EEECCCCCCEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCEEECC HSYPACAQHAPNEHLLASVASEGLRIMAGLYWDLGEPGLPWQRSARAQ CCCCHHHHCCCCHHHHHHHHHCCHHEEHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TRDQLLESASAWFDAGHFQRDLARRVAWRTESDGGQPGPALGDYLRDDIVPSLIRLGFD CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC CEVQANPVATGGPLLVARRVEGQDLPTVLTYGHGDVVNGQDKHWREGLSPWQLTVEGDRW CEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHCCCCCEEEEEECCCE YGRGTADNKGQHTINFAALEHTLGARGGRLGYNVTVLLEMGEEAGSPGLRELCERERELL ECCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH RADLLIACDGPRVQAQQPTLFLGSRGLVNFSLRLQSRERAYHSGNWGGVLTNPGIVLAHA HHCEEEEECCCCCCCCCCEEEECCCCEEEEEEEECHHHHHHHCCCCCCEECCCHHHHHHH IASMVDERGRIQVDGLRPPALADNIRRALRDVQVGGGTDDPQINPAWGEPGLTAAERLVG HHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHC WNTLEVLALGAGSAERPVNAIPPQAVAHCQLRFVPGTPWQQLQSIVRAHLDAHGFDAVEV CCEEEEEEECCCCCCCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE SVTADSPATRLDLDNPWVGWAMQSMAMSSGKPVTLLPNLAGSLPNDVFADVLGLPTLWVP EEECCCCCCEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCEEECC HSYPACAQHAPNEHLLASVASEGLRIMAGLYWDLGEPGLPWQRSARAQ CCCCHHHHCCCCHHHHHHHHHCCHHEEHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA