| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is glxR [H]
Identifier: 91787594
GI number: 91787594
Start: 1765466
End: 1766362
Strand: Reverse
Name: glxR [H]
Synonym: Bpro_1712
Alternate gene names: 91787594
Gene position: 1766362-1765466 (Counterclockwise)
Preceding gene: 91787595
Following gene: 91787592
Centisome position: 33.97
GC content: 66.11
Gene sequence:
>897_bases ATGACCGTTGAAAGCGACCCGTACGCAAGAAAAATCACCTTTTTGGGCACAGGCAGCATGGGCCTGCCCATGGCCCGACG CCTGTGCGAGGCCGGGTATGCACTGCAGGTGTGGAACCGCACGCCAGCCAGGGCCGCCTCGCTGGCGGCGCTGGGCGCGA CCATTCACGAGCAGGCCCGCGCAGCGGCCAGGGATGCCGACATCGTGGTCAGCATGCTGGAAAACGGCGCCGTGGTGCAA GACGTGCTGTTCGCGCAAGGCGTTGCTGCAGCGATGAAACCAGGGTCGCTCTTCCTCGACATGGCATCCATCACGCCCCG TGAAGCACGTGACCACGCCGCGCGGCTGGGCGCCTTGGGCATCGCCCACCTGGATACGCCGGTCTCTGGCGGCACCGTCG GCGCCGAGCAGGGCACGCTGGTCATCATGGCGGGCGGCAAGCCGGCCGACTTCGAGCGCTCCCTGCCCTTGCTCAAGGTA TTCGGCCGCGCCACGCACGTGGGCCCGCACGGCAGCGGGCAGCTCACCAAACTGGCCAACCAGATGATTGTCGGCATCAC GATAGGCGCGGTGGCCGAAGCCTTGCTGTTCGCCACCAAGGGCGGCGCCGACATGGCCAAGGTCAAGGAAGCCATCACCG GCGGTTTTGCCGACAGCCGCGTGTTGCAGTTGCACGGCCAGCGCATGGTGGAGCGGGACTTCGCGCCACGCGCGCGCTTG TCGATACAGCTCAAGGACATGCGCAATGCGCTGGCGACCGCGCAGGAAATCGGCTTTGATGCACCCATCACCGGGCTCTT CGAGCAGCTCTACGCCGAGGGTGTGGAACACGGCCTGACAGACCTCGACCAGTCGGGACTCTTTGTGGAACTGGCCAGCC GCAATGGCATGAGCTGA
Upstream 100 bases:
>100_bases TGGAAACCATGTTCTCGCCGGCCATCAAGAAAGCTGCCTGACAGCCTTCTTGCGCTGCGTGCCGGATGATGGGTACATCT GCCATTAACCAGGAACCCGA
Downstream 100 bases:
>100_bases GTTCAAGCCCGCGAAGGCCTTCCGCTACCGTCTCCGATGCCGGGACGGCCGGGGAGGCAGGCCGGCTCAGTAGCCCAGCA TGTTGCTGCGTACATGCGCC
Product: 2-hydroxy-3-oxopropionate reductase
Products: NA
Alternate protein names: Tartronate semialdehyde reductase; TSAR [H]
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQ DVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKV FGRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARL SIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGMS
Sequences:
>Translated_298_residues MTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQ DVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKV FGRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARL SIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGMS >Mature_297_residues TVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQD VLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLS IQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGMS
Specific function: Glyoxylate catabolism. [C]
COG id: COG2084
COG function: function code I; 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyisobutyrate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI23308751, Length=208, Percent_Identity=29.8076923076923, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI40556376, Length=284, Percent_Identity=25, Blast_Score=92, Evalue=4e-19, Organism=Escherichia coli, GI1786719, Length=279, Percent_Identity=42.6523297491039, Blast_Score=212, Evalue=3e-56, Organism=Escherichia coli, GI145693186, Length=279, Percent_Identity=39.426523297491, Blast_Score=190, Evalue=9e-50, Organism=Escherichia coli, GI1790315, Length=296, Percent_Identity=28.0405405405405, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1789092, Length=283, Percent_Identity=28.6219081272085, Blast_Score=97, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17557316, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24655230, Length=288, Percent_Identity=30.9027777777778, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI19922568, Length=288, Percent_Identity=30.9027777777778, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI28574115, Length=286, Percent_Identity=24.4755244755245, Blast_Score=102, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002204 - InterPro: IPR015815 - InterPro: IPR008927 - InterPro: IPR006115 - InterPro: IPR013328 - InterPro: IPR016040 - InterPro: IPR006183 - InterPro: IPR006398 [H]
Pfam domain/function: PF03446 NAD_binding_2 [H]
EC number: =1.1.1.60 [H]
Molecular weight: Translated: 31275; Mature: 31144
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQAR CCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH AAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHEEEHHHCCCHHHHHHHHHHHHHH IAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHVGPHGSGQLTKLAN HHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHH QMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARL HHEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHE SIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGMS EEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHCCCCCCCEEEECCCCCCC >Mature Secondary Structure TVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQAR CCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH AAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHEEEHHHCCCHHHHHHHHHHHHHH IAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHVGPHGSGQLTKLAN HHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHH QMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARL HHEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHE SIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGMS EEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10601204; 9278503 [H]