| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yrrC [H]
Identifier: 91787588
GI number: 91787588
Start: 1758797
End: 1760989
Strand: Reverse
Name: yrrC [H]
Synonym: Bpro_1706
Alternate gene names: 91787588
Gene position: 1760989-1758797 (Counterclockwise)
Preceding gene: 91787589
Following gene: 91787587
Centisome position: 33.86
GC content: 64.02
Gene sequence:
>2193_bases ATGAATGTGCCAAGTGTCACCGTGCGTATCAGTGCCGTGCGCAGCCAGAACCCGTGTGGGCGGGGTGGCGCGATCTTCAC GGGCATCGAGGTGGACGACAAAGGCTGGCGCGTCGATGCCAAAACCCACTACGTCATCAAAGCCTCCAGCCAATTGCTTC AGGCCCCGGTCGAATGCGGGCAACTGTGGCGCATTGCCGGCACACCCGAGGCCAACACCATAGTCGTCAATGGCTACCGG CTCACCGAAGCCACCATCACGGCCGAATCCATGGAAATGCTGCGCCCCTCGGGCGAGCACATCATTACGCTGCTTGGTCA GGGCGAAGCCTTCGAGGGCATCGGCGAAGTCAAGGCAAGGCGCTTGTGGGAACACTTTGGCGATGCCTTGTACGACCTGC TCGACCGGTCGGACGTCGACCGACTCGCAGAGGTACTGCCCAGGCCGATGGCGCAAAAGCTCGCGGATGCATGGCAGCAG TGGGGCAACACCTTTACCCTGCAATGGCTGCAGTCCAAGGGGTTTGCCGTAGCGCTCGGGCGCAAGGTACTGGACTTCTT CGGCAAGGACGCCGCCCGCAAGATCGAGGACGACCCCTATCGCCTGCTGAGCTTTGCCGCCAACTGGGCCACCGTGGATG CCCTGGCGCAAGACACCTTCGGCCTCAGTCCCACCGACCCGCGACGTCTCGCGGGCTCGGTCGAGGAAGCGCTGTACGCC GCGTTTGACGCCGGCCACACCTGCATCCCCGAGCTTGAGCTTGCGCGTCGCCTGCGCGTCTTGTTGCAGCGAAGCGATGT GCTGGGGTCGGCACTGGCGCAAGCCGAATCAGCGGGGCGGTTCATCCGCCATGGCGAGCGACTGCACGCGCCGGGCCCCT TTGTGATGGAGCAGGGCGTGGCCCAAGCCATCGCCCGCCGCGCCGCCAATCCAGACCCCTTGCTCGACGCCGACTCACTG GCGGAACTCATCGCCGACTATCAGGCACAAGCCGGCATCAGCTTGCATCAAAAGCAGGTCGAGGCGCTGGAACTGGCGAA TGCCAACCCGTTCTGCGTCATTACCGGGGGCGCCGGCACCGGCAAGACCACCGTGTTGCGCGGCTTGTTTCGCGTCTTTG AGGCGGCTGGCCACACGATCTACCCCATGGCGCTCTCCGGGCGTGCCGCCAAGCGCATTGGCGAGGCCACCGGCCATGGC GCCCAAACCATCGCCGGTTTCCTCAAGCACTTCAATGCAGATGATGCGCCTTCGAACGCGGTGGTGGTGATCGATGAGGC CTCGATGGTGGATTTGCCGTCCGCTTATCGGGTGATCCGGCATCTGCCGCTCCACTACCGTGTGGTATTGGTCGGTGACC CGAACCAACTGCCACCGGTTGGGCCAGGCTTGCTGCTGCATGAACTGGCGCATCAACCCCAAGTTCCCGTCGTGGAACTC TCGCAGGTCAAGCGCTATGGCGGGGCGATTGCCGAGGCCGCCGCCCTGATCCGCGACGGCGAGTGGCCCGATTTGCCCGC CGACGCTCTCGCCGACATTGCCTTCCTGGCATGTCCACCGGATCAGATCAACGAAGTCGTGCTGCGTCTGTACGACCAGG ATCGCAGTGCCAGTCAGATTCTGTGCGCCACGCGCAATGCCGCAGCCGGTGGCATGAATGCCATCAACGCGCTGTGCCAG CGCCACACCAACGCCCACGGTGAAGGGCTGATGCACTGGAACCTGGAATTCGACCAGCCGCAAGGCACTGGTATACGCGT GGGCGATCCTGTCATCTGTCTGCGCAATGACTGGGAGATCGATTTGCAGAACGGCTCACTCGGCGTCGTGCTGTCCGTGG AGCCACCCGTGCCGGACATTGCGCCGGAGCGCCGCCTTGGGCGCATCCTGTGGGATGACGGACGCACGCGTGACCTGACC CCTGAGTTGCTGGCGCATCTGGAACTGGCCTACGCCATCACCATTCACAAGGCGCAGGGCAGCGGCTTTCAGCGGGTCAT CATTCCTGTGCGCCAGAGCAAGCTGCTGGATCGCACGCTGCTGTACACCGCCGTGACGCGGGCAGAGCAACAGGTGATTC TGGTCGGCGACGTGGAAGCGGCCAAAACAGCCATACGAGCGCCGCGCCATTCGGATCGCCGGCATGTCGCGTTGGGCGCG TTGCTGCGTGAGCAGTTCGAGAGGATGGTCTGA
Upstream 100 bases:
>100_bases AAAACGCCTCCCTGCGCGCCGAACTCACCCAGGTGCGGGCGGACCTGGATCGCTACCGGTTGATGGATAGCGTGCTGTGC AGCACCGGACGCCTGCCGCG
Downstream 100 bases:
>100_bases TGCAGCACACCACGATTCGCGGCAAGGTGCATCGCGACAACAGCGGCGTGGTCACGGAAATCCCCATCATCCTGACCGAG CACGGCCCCTTGCAGCCGCT
Product: putative ATP-dependent exoDNAse (exonuclease V) subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MNVPSVTVRISAVRSQNPCGRGGAIFTGIEVDDKGWRVDAKTHYVIKASSQLLQAPVECGQLWRIAGTPEANTIVVNGYR LTEATITAESMEMLRPSGEHIITLLGQGEAFEGIGEVKARRLWEHFGDALYDLLDRSDVDRLAEVLPRPMAQKLADAWQQ WGNTFTLQWLQSKGFAVALGRKVLDFFGKDAARKIEDDPYRLLSFAANWATVDALAQDTFGLSPTDPRRLAGSVEEALYA AFDAGHTCIPELELARRLRVLLQRSDVLGSALAQAESAGRFIRHGERLHAPGPFVMEQGVAQAIARRAANPDPLLDADSL AELIADYQAQAGISLHQKQVEALELANANPFCVITGGAGTGKTTVLRGLFRVFEAAGHTIYPMALSGRAAKRIGEATGHG AQTIAGFLKHFNADDAPSNAVVVIDEASMVDLPSAYRVIRHLPLHYRVVLVGDPNQLPPVGPGLLLHELAHQPQVPVVEL SQVKRYGGAIAEAAALIRDGEWPDLPADALADIAFLACPPDQINEVVLRLYDQDRSASQILCATRNAAAGGMNAINALCQ RHTNAHGEGLMHWNLEFDQPQGTGIRVGDPVICLRNDWEIDLQNGSLGVVLSVEPPVPDIAPERRLGRILWDDGRTRDLT PELLAHLELAYAITIHKAQGSGFQRVIIPVRQSKLLDRTLLYTAVTRAEQQVILVGDVEAAKTAIRAPRHSDRRHVALGA LLREQFERMV
Sequences:
>Translated_730_residues MNVPSVTVRISAVRSQNPCGRGGAIFTGIEVDDKGWRVDAKTHYVIKASSQLLQAPVECGQLWRIAGTPEANTIVVNGYR LTEATITAESMEMLRPSGEHIITLLGQGEAFEGIGEVKARRLWEHFGDALYDLLDRSDVDRLAEVLPRPMAQKLADAWQQ WGNTFTLQWLQSKGFAVALGRKVLDFFGKDAARKIEDDPYRLLSFAANWATVDALAQDTFGLSPTDPRRLAGSVEEALYA AFDAGHTCIPELELARRLRVLLQRSDVLGSALAQAESAGRFIRHGERLHAPGPFVMEQGVAQAIARRAANPDPLLDADSL AELIADYQAQAGISLHQKQVEALELANANPFCVITGGAGTGKTTVLRGLFRVFEAAGHTIYPMALSGRAAKRIGEATGHG AQTIAGFLKHFNADDAPSNAVVVIDEASMVDLPSAYRVIRHLPLHYRVVLVGDPNQLPPVGPGLLLHELAHQPQVPVVEL SQVKRYGGAIAEAAALIRDGEWPDLPADALADIAFLACPPDQINEVVLRLYDQDRSASQILCATRNAAAGGMNAINALCQ RHTNAHGEGLMHWNLEFDQPQGTGIRVGDPVICLRNDWEIDLQNGSLGVVLSVEPPVPDIAPERRLGRILWDDGRTRDLT PELLAHLELAYAITIHKAQGSGFQRVIIPVRQSKLLDRTLLYTAVTRAEQQVILVGDVEAAKTAIRAPRHSDRRHVALGA LLREQFERMV >Mature_730_residues MNVPSVTVRISAVRSQNPCGRGGAIFTGIEVDDKGWRVDAKTHYVIKASSQLLQAPVECGQLWRIAGTPEANTIVVNGYR LTEATITAESMEMLRPSGEHIITLLGQGEAFEGIGEVKARRLWEHFGDALYDLLDRSDVDRLAEVLPRPMAQKLADAWQQ WGNTFTLQWLQSKGFAVALGRKVLDFFGKDAARKIEDDPYRLLSFAANWATVDALAQDTFGLSPTDPRRLAGSVEEALYA AFDAGHTCIPELELARRLRVLLQRSDVLGSALAQAESAGRFIRHGERLHAPGPFVMEQGVAQAIARRAANPDPLLDADSL AELIADYQAQAGISLHQKQVEALELANANPFCVITGGAGTGKTTVLRGLFRVFEAAGHTIYPMALSGRAAKRIGEATGHG AQTIAGFLKHFNADDAPSNAVVVIDEASMVDLPSAYRVIRHLPLHYRVVLVGDPNQLPPVGPGLLLHELAHQPQVPVVEL SQVKRYGGAIAEAAALIRDGEWPDLPADALADIAFLACPPDQINEVVLRLYDQDRSASQILCATRNAAAGGMNAINALCQ RHTNAHGEGLMHWNLEFDQPQGTGIRVGDPVICLRNDWEIDLQNGSLGVVLSVEPPVPDIAPERRLGRILWDDGRTRDLT PELLAHLELAYAITIHKAQGSGFQRVIIPVRQSKLLDRTLLYTAVTRAEQQVILVGDVEAAKTAIRAPRHSDRRHVALGA LLREQFERMV
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=183, Percent_Identity=31.1475409836066, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 79559; Mature: 79559
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVPSVTVRISAVRSQNPCGRGGAIFTGIEVDDKGWRVDAKTHYVIKASSQLLQAPVECG CCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCEEEEEECCHHHHHHHHHHC QLWRIAGTPEANTIVVNGYRLTEATITAESMEMLRPSGEHIITLLGQGEAFEGIGEVKAR CEEEECCCCCCCEEEEECEEEEEEEEEHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH RLWEHFGDALYDLLDRSDVDRLAEVLPRPMAQKLADAWQQWGNTFTLQWLQSKGFAVALG HHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCCEEEHH RKVLDFFGKDAARKIEDDPYRLLSFAANWATVDALAQDTFGLSPTDPRRLAGSVEEALYA HHHHHHHCCHHHHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH AFDAGHTCIPELELARRLRVLLQRSDVLGSALAQAESAGRFIRHGERLHAPGPFVMEQGV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHH AQAIARRAANPDPLLDADSLAELIADYQAQAGISLHQKQVEALELANANPFCVITGGAGT HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCC GKTTVLRGLFRVFEAAGHTIYPMALSGRAAKRIGEATGHGAQTIAGFLKHFNADDAPSNA CHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC VVVIDEASMVDLPSAYRVIRHLPLHYRVVLVGDPNQLPPVGPGLLLHELAHQPQVPVVEL EEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHH SQVKRYGGAIAEAAALIRDGEWPDLPADALADIAFLACPPDQINEVVLRLYDQDRSASQI HHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEECCHHHHHHHHHHHHCCCCCCCCE LCATRNAAAGGMNAINALCQRHTNAHGEGLMHWNLEFDQPQGTGIRVGDPVICLRNDWEI EEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEECCCEEEEECCCEE DLQNGSLGVVLSVEPPVPDIAPERRLGRILWDDGRTRDLTPELLAHLELAYAITIHKAQG EECCCCEEEEEEECCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHHEEEEEEEEECCC SGFQRVIIPVRQSKLLDRTLLYTAVTRAEQQVILVGDVEAAKTAIRAPRHSDRRHVALGA CCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHH LLREQFERMV HHHHHHHHCC >Mature Secondary Structure MNVPSVTVRISAVRSQNPCGRGGAIFTGIEVDDKGWRVDAKTHYVIKASSQLLQAPVECG CCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCEEEEEECCHHHHHHHHHHC QLWRIAGTPEANTIVVNGYRLTEATITAESMEMLRPSGEHIITLLGQGEAFEGIGEVKAR CEEEECCCCCCCEEEEECEEEEEEEEEHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH RLWEHFGDALYDLLDRSDVDRLAEVLPRPMAQKLADAWQQWGNTFTLQWLQSKGFAVALG HHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCCEEEHH RKVLDFFGKDAARKIEDDPYRLLSFAANWATVDALAQDTFGLSPTDPRRLAGSVEEALYA HHHHHHHCCHHHHHCCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH AFDAGHTCIPELELARRLRVLLQRSDVLGSALAQAESAGRFIRHGERLHAPGPFVMEQGV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHH AQAIARRAANPDPLLDADSLAELIADYQAQAGISLHQKQVEALELANANPFCVITGGAGT HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCC GKTTVLRGLFRVFEAAGHTIYPMALSGRAAKRIGEATGHGAQTIAGFLKHFNADDAPSNA CHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC VVVIDEASMVDLPSAYRVIRHLPLHYRVVLVGDPNQLPPVGPGLLLHELAHQPQVPVVEL EEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHH SQVKRYGGAIAEAAALIRDGEWPDLPADALADIAFLACPPDQINEVVLRLYDQDRSASQI HHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEECCHHHHHHHHHHHHCCCCCCCCE LCATRNAAAGGMNAINALCQRHTNAHGEGLMHWNLEFDQPQGTGIRVGDPVICLRNDWEI EEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEECCCEEEEECCCEE DLQNGSLGVVLSVEPPVPDIAPERRLGRILWDDGRTRDLTPELLAHLELAYAITIHKAQG EECCCCEEEEEEECCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHHEEEEEEEEECCC SGFQRVIIPVRQSKLLDRTLLYTAVTRAEQQVILVGDVEAAKTAIRAPRHSDRRHVALGA CCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHH LLREQFERMV HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]