| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787587
Identifier: 91787587
GI number: 91787587
Start: 1757307
End: 1758797
Strand: Reverse
Name: 91787587
Synonym: Bpro_1705
Alternate gene names: NA
Gene position: 1758797-1757307 (Counterclockwise)
Preceding gene: 91787588
Following gene: 91787586
Centisome position: 33.82
GC content: 62.84
Gene sequence:
>1491_bases ATGCAGCACACCACGATTCGCGGCAAGGTGCATCGCGACAACAGCGGCGTGGTCACGGAAATCCCCATCATCCTGACCGA GCACGGCCCCTTGCAGCCGCTGGTCGACTACCTGTTGGCGCATGTGCAGGTGCGCAGCCATGCGTGGATGCTCAAGGTTA CGCAAGCGGTCGGCCTCCTGATCGACTACATGGCTGCCAACCATGACTGTTTCGACGATCCCAAGGACTTGTTCGAAACC TTTACGCAGCGTCTCTACACGGGCACCGTGGGCGACGACGGCAACGATCCCAGCGGGCTCTACTGGCAGGGACGCAACCC GGCGGTCGTGCGGCCCTTGGTGCAGGGCATCTCGGGGTTCTCGGACTGGATGGCACAAACCCAGGGCAGCAAGCCGCTCA ACCCGTGGCGCCAGGCCACGCGCAGCGAAGAAATGCTGGCCTGGGCGGCGTGGCATCAGAAGCGCGACCGCGCCTTTCTG GCGCACAGCTGGGATCGGGAAACCGCGTCGCTCGCCATGACCCGCGCCCGCAACGTCCTGCTCAAGCGCACGCCTGTGAT TGACCATGAACCGGTCAAGAAGTTTCCCGAGGATCGCATCCACGATCTGCTGTTCAAGGGCTTCATTGTGCCGGGCAAAC AGAAAAGCCCGCGTCTGGAAGAACGGCTGAACCTGCGCGACATCCTGATCACCATGCTGATGCACTACGGCGGGCTGCGC ATGTCCGAGCCCTTTCATCTCTATGTGCGGGACGTGGTGTCCGAATCCAGGCGTCCAGCCGACCCCATCCGTCCGGATCG GGCCTTGGTGCACATCTACCACCCGAGTCTGGGTACCGCCCCGCCCGATTGGCTGGATGCCAGGGGCAAGCCCATCAAGT GCAACCGTCTGGCCTACTTGAACGGCAAGTACGCGATGCGGCCACGCGACGAATACGCCAGCAGCGACCAGTGGCACGCC GGCTGGAAAGGCAATGCGCTCGACTCCAAAGGACACTTCATGTATGTCAATTGGTATCCACCATGGGCGGGGGAGTTGTT CTGGAAGCTATGGTTTCTGTACATGGCGCAGCGGGCGCAACTGGAATGTGACCATCCCTTTGCCTTCGTGACCAGGGAGG GCAAACCCTATGCCATCGACTCGTTCGAGCGTCAGCATCGGCGCGCCGTGGAGCGCATTGGGCTGCAAGCTGCCAAAGCC CTGGGCACCTCGCCGCACGGGCATCGCCATGCCTACGGCCAGGCGCTGGCCGATGCCAAGATTGACCCGATCTACCGCAA GAAGGCGCTGCACCACAAGTCGCTTGAATCGCAGGTGGTCTATACCGAGCCGGATCGGGCCAGGCTCGTGCGCGCACTGG AGGCCGCCGCCGAGCGCGAGAAGGCCGGCACGGTACTGCCGCCACCCGACCTGCTGCGCTATGGCTTCAAGGACGTCGAC CCGCTGGGACTGATGAGCGGTCCGAACCCGAAATTGTTGAGGAAAAACTGA
Upstream 100 bases:
>100_bases TGGAAGCGGCCAAAACAGCCATACGAGCGCCGCGCCATTCGGATCGCCGGCATGTCGCGTTGGGCGCGTTGCTGCGTGAG CAGTTCGAGAGGATGGTCTG
Downstream 100 bases:
>100_bases GATGGCCAAAAAAATTAAGGGAACCGATCAAAGCTTCGACCCCGGGTTCCGCTTCCTGCTGGCCCTCGATCCGGCCTTCG AGGACTGGCGGGTGCTGGCC
Product: phage integrase
Products: NA
Alternate protein names: Phage Integrase; Integrase Family Protein; Site-Specific Recombinase; DNA Integration Protein; Phage Integrase Family Site Specific Recombinase
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MQHTTIRGKVHRDNSGVVTEIPIILTEHGPLQPLVDYLLAHVQVRSHAWMLKVTQAVGLLIDYMAANHDCFDDPKDLFET FTQRLYTGTVGDDGNDPSGLYWQGRNPAVVRPLVQGISGFSDWMAQTQGSKPLNPWRQATRSEEMLAWAAWHQKRDRAFL AHSWDRETASLAMTRARNVLLKRTPVIDHEPVKKFPEDRIHDLLFKGFIVPGKQKSPRLEERLNLRDILITMLMHYGGLR MSEPFHLYVRDVVSESRRPADPIRPDRALVHIYHPSLGTAPPDWLDARGKPIKCNRLAYLNGKYAMRPRDEYASSDQWHA GWKGNALDSKGHFMYVNWYPPWAGELFWKLWFLYMAQRAQLECDHPFAFVTREGKPYAIDSFERQHRRAVERIGLQAAKA LGTSPHGHRHAYGQALADAKIDPIYRKKALHHKSLESQVVYTEPDRARLVRALEAAAEREKAGTVLPPPDLLRYGFKDVD PLGLMSGPNPKLLRKN
Sequences:
>Translated_496_residues MQHTTIRGKVHRDNSGVVTEIPIILTEHGPLQPLVDYLLAHVQVRSHAWMLKVTQAVGLLIDYMAANHDCFDDPKDLFET FTQRLYTGTVGDDGNDPSGLYWQGRNPAVVRPLVQGISGFSDWMAQTQGSKPLNPWRQATRSEEMLAWAAWHQKRDRAFL AHSWDRETASLAMTRARNVLLKRTPVIDHEPVKKFPEDRIHDLLFKGFIVPGKQKSPRLEERLNLRDILITMLMHYGGLR MSEPFHLYVRDVVSESRRPADPIRPDRALVHIYHPSLGTAPPDWLDARGKPIKCNRLAYLNGKYAMRPRDEYASSDQWHA GWKGNALDSKGHFMYVNWYPPWAGELFWKLWFLYMAQRAQLECDHPFAFVTREGKPYAIDSFERQHRRAVERIGLQAAKA LGTSPHGHRHAYGQALADAKIDPIYRKKALHHKSLESQVVYTEPDRARLVRALEAAAEREKAGTVLPPPDLLRYGFKDVD PLGLMSGPNPKLLRKN >Mature_496_residues MQHTTIRGKVHRDNSGVVTEIPIILTEHGPLQPLVDYLLAHVQVRSHAWMLKVTQAVGLLIDYMAANHDCFDDPKDLFET FTQRLYTGTVGDDGNDPSGLYWQGRNPAVVRPLVQGISGFSDWMAQTQGSKPLNPWRQATRSEEMLAWAAWHQKRDRAFL AHSWDRETASLAMTRARNVLLKRTPVIDHEPVKKFPEDRIHDLLFKGFIVPGKQKSPRLEERLNLRDILITMLMHYGGLR MSEPFHLYVRDVVSESRRPADPIRPDRALVHIYHPSLGTAPPDWLDARGKPIKCNRLAYLNGKYAMRPRDEYASSDQWHA GWKGNALDSKGHFMYVNWYPPWAGELFWKLWFLYMAQRAQLECDHPFAFVTREGKPYAIDSFERQHRRAVERIGLQAAKA LGTSPHGHRHAYGQALADAKIDPIYRKKALHHKSLESQVVYTEPDRARLVRALEAAAEREKAGTVLPPPDLLRYGFKDVD PLGLMSGPNPKLLRKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56835; Mature: 56835
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQHTTIRGKVHRDNSGVVTEIPIILTEHGPLQPLVDYLLAHVQVRSHAWMLKVTQAVGLL CCCCEEECEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDYMAANHDCFDDPKDLFETFTQRLYTGTVGDDGNDPSGLYWQGRNPAVVRPLVQGISGF HHHHHCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH SDWMAQTQGSKPLNPWRQATRSEEMLAWAAWHQKRDRAFLAHSWDRETASLAMTRARNVL HHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH LKRTPVIDHEPVKKFPEDRIHDLLFKGFIVPGKQKSPRLEERLNLRDILITMLMHYGGLR HHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCC MSEPFHLYVRDVVSESRRPADPIRPDRALVHIYHPSLGTAPPDWLDARGKPIKCNRLAYL CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCEEECEEEEE NGKYAMRPRDEYASSDQWHAGWKGNALDSKGHFMYVNWYPPWAGELFWKLWFLYMAQRAQ CCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC LECDHPFAFVTREGKPYAIDSFERQHRRAVERIGLQAAKALGTSPHGHRHAYGQALADAK CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC IDPIYRKKALHHKSLESQVVYTEPDRARLVRALEAAAEREKAGTVLPPPDLLRYGFKDVD CCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC PLGLMSGPNPKLLRKN CCCCCCCCCCCCCCCC >Mature Secondary Structure MQHTTIRGKVHRDNSGVVTEIPIILTEHGPLQPLVDYLLAHVQVRSHAWMLKVTQAVGLL CCCCEEECEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDYMAANHDCFDDPKDLFETFTQRLYTGTVGDDGNDPSGLYWQGRNPAVVRPLVQGISGF HHHHHCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH SDWMAQTQGSKPLNPWRQATRSEEMLAWAAWHQKRDRAFLAHSWDRETASLAMTRARNVL HHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH LKRTPVIDHEPVKKFPEDRIHDLLFKGFIVPGKQKSPRLEERLNLRDILITMLMHYGGLR HHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCC MSEPFHLYVRDVVSESRRPADPIRPDRALVHIYHPSLGTAPPDWLDARGKPIKCNRLAYL CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCEEECEEEEE NGKYAMRPRDEYASSDQWHAGWKGNALDSKGHFMYVNWYPPWAGELFWKLWFLYMAQRAQ CCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC LECDHPFAFVTREGKPYAIDSFERQHRRAVERIGLQAAKALGTSPHGHRHAYGQALADAK CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC IDPIYRKKALHHKSLESQVVYTEPDRARLVRALEAAAEREKAGTVLPPPDLLRYGFKDVD CCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC PLGLMSGPNPKLLRKN CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA