| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787455
Identifier: 91787455
GI number: 91787455
Start: 1616606
End: 1617823
Strand: Direct
Name: 91787455
Synonym: Bpro_1566
Alternate gene names: NA
Gene position: 1616606-1617823 (Clockwise)
Preceding gene: 91787454
Following gene: 91787456
Centisome position: 31.09
GC content: 63.79
Gene sequence:
>1218_bases ATGAGCGCCACAGAAAAGCCGGTTTGGGTGTGGCTACCCGGCCAGGCGCAACCAGTGCATTGCGGCACATTCTCCCTGCA GGGAGGCGTGGGGACTTTTCACTACGACGCATCCTACCGGGCACGTGAAGACGCGCTGTCACTTGACCCATTCAGCTTGC CGTTCACCCGGCGCGTTCGCGGCGCCAAGGAGACCCGTCAAGGGGGTCTATTTGGCGTTATCCGCGACGCGAGCCCTGAG GGCTTCGGCCTGGCGCTGCTTGAGCAGTTGCGTGGCACCACCTTGGCCGACCCCATGCTCCGCCTGGAGCTTTCGGAAGG CGACTCCGTGGGGGCTATTGAGGTGTGCGATGACATTGAGTCCAAGCTGGCGTTTAGCGCGCCTACTTCAGAGCAGTTGC TGGCCGCCATCGCGAAACTGCCGCCCGAGCGCGCCAGCAGCCAGGCTGCGCGGGAGGTGAAGGGGATGCACGGCACCAGC CTGGGCGGGGAGCGCCCCAAACTAACGGTGTTGCACAAAGGGCAACTGTGGATTGCCAAGCTCCAGGACCGCGGCGACCC GCCCCATGCCCCGCTGCGAGAATTCGTTGCAATGCGTCTGGCCGCCCAATGCGGCATCACGGCCGCCGAGGTGGAGTTTG TGCAGCAAGGTGAGCGCGAAATTCTGCTCGTCAGGCGCTTTGACCGGCACAGGGACGCGATGGGCAACGTGTTCCGCAGT CTCTACGCTAGCGCGCATACCGTCCTGCGCCTGGACACTCAGACACGCGGCGAGCGGCAGCGCTCCTACGTGGGTTTTTC GCACGAAATCCAGCGCTGGTGCGGCCTGGGGGACGTGGATACCCGAGAAATGCAACGCGAGCTGTGGCGGCGCATGGCCT TCAATGCTCTCTGCGGAAACGGTGACGACCACCCCCGCAACCACGGCCTGGTTTACCGGGACGGGCGCTGGGGCCTGGCT GACGCCTTTGACATCGCCCCCTACATCACGTTTTCAGGAACACTTGCGATGGCCATTACCCGCGAGGGGGACTCCGCCGC GACCACCGTGAACCTGCTGAAGAACTGCGACAACTTCGGCTACGAGAAAGCCGAGGCCCTTCATTACCTCGAGCAGACCA TGCAAAAAATTTCCACCGGGTGGGGCAATGAGCTGGCCGGGTGCGGACACGCACGCGACCTCCTGCCGACTCCATCCTTC GTATGGCTCGAGGACTAG
Upstream 100 bases:
>100_bases GCGGCTTTGCGGAACAGGTTGGCCTCCTCGGACGAGAAGCCGGGGACGTCGCACTGCTGGAGGCCCAACTTCCCCACCGC GTCCGCGGCGCAGGCACGCG
Downstream 100 bases:
>100_bases GAGGCTAGTCCTCGATCTATACGAAGCGAAGGATATCTGACTGGCCGTTATGGCGCGGTGCCGTTCTTCAAGAAATTCCC AAACTTCCTGCAGCGCATGC
Product: HipA-like protein
Products: NA
Alternate protein names: HipA Domain Protein; Xin-Antitoxin System Toxin Component HipA Family; Amidophosphoribosyl Transferase; HipA Protein; HipA-Like C-Terminal Domain-Containing; HipA-Like; HipA-Like Protein; Hipa Protein; Protein Related Capsule Biosynthesis -Like; Protein Containing HipA-Like C-Terminal Domain; Conserved Protein; Orf_Bo
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSATEKPVWVWLPGQAQPVHCGTFSLQGGVGTFHYDASYRAREDALSLDPFSLPFTRRVRGAKETRQGGLFGVIRDASPE GFGLALLEQLRGTTLADPMLRLELSEGDSVGAIEVCDDIESKLAFSAPTSEQLLAAIAKLPPERASSQAAREVKGMHGTS LGGERPKLTVLHKGQLWIAKLQDRGDPPHAPLREFVAMRLAAQCGITAAEVEFVQQGEREILLVRRFDRHRDAMGNVFRS LYASAHTVLRLDTQTRGERQRSYVGFSHEIQRWCGLGDVDTREMQRELWRRMAFNALCGNGDDHPRNHGLVYRDGRWGLA DAFDIAPYITFSGTLAMAITREGDSAATTVNLLKNCDNFGYEKAEALHYLEQTMQKISTGWGNELAGCGHARDLLPTPSF VWLED
Sequences:
>Translated_405_residues MSATEKPVWVWLPGQAQPVHCGTFSLQGGVGTFHYDASYRAREDALSLDPFSLPFTRRVRGAKETRQGGLFGVIRDASPE GFGLALLEQLRGTTLADPMLRLELSEGDSVGAIEVCDDIESKLAFSAPTSEQLLAAIAKLPPERASSQAAREVKGMHGTS LGGERPKLTVLHKGQLWIAKLQDRGDPPHAPLREFVAMRLAAQCGITAAEVEFVQQGEREILLVRRFDRHRDAMGNVFRS LYASAHTVLRLDTQTRGERQRSYVGFSHEIQRWCGLGDVDTREMQRELWRRMAFNALCGNGDDHPRNHGLVYRDGRWGLA DAFDIAPYITFSGTLAMAITREGDSAATTVNLLKNCDNFGYEKAEALHYLEQTMQKISTGWGNELAGCGHARDLLPTPSF VWLED >Mature_404_residues SATEKPVWVWLPGQAQPVHCGTFSLQGGVGTFHYDASYRAREDALSLDPFSLPFTRRVRGAKETRQGGLFGVIRDASPEG FGLALLEQLRGTTLADPMLRLELSEGDSVGAIEVCDDIESKLAFSAPTSEQLLAAIAKLPPERASSQAAREVKGMHGTSL GGERPKLTVLHKGQLWIAKLQDRGDPPHAPLREFVAMRLAAQCGITAAEVEFVQQGEREILLVRRFDRHRDAMGNVFRSL YASAHTVLRLDTQTRGERQRSYVGFSHEIQRWCGLGDVDTREMQRELWRRMAFNALCGNGDDHPRNHGLVYRDGRWGLAD AFDIAPYITFSGTLAMAITREGDSAATTVNLLKNCDNFGYEKAEALHYLEQTMQKISTGWGNELAGCGHARDLLPTPSFV WLED
Specific function: Unknown
COG id: COG3550
COG function: function code R; Uncharacterized protein related to capsule biosynthesis enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44884; Mature: 44753
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATEKPVWVWLPGQAQPVHCGTFSLQGGVGTFHYDASYRAREDALSLDPFSLPFTRRVR CCCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHC GAKETRQGGLFGVIRDASPEGFGLALLEQLRGTTLADPMLRLELSEGDSVGAIEVCDDIE CCHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHH SKLAFSAPTSEQLLAAIAKLPPERASSQAAREVKGMHGTSLGGERPKLTVLHKGQLWIAK HHHEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEE LQDRGDPPHAPLREFVAMRLAAQCGITAAEVEFVQQGEREILLVRRFDRHRDAMGNVFRS ECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH LYASAHTVLRLDTQTRGERQRSYVGFSHEIQRWCGLGDVDTREMQRELWRRMAFNALCGN HHHCCCEEEEECCHHCCHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC GDDHPRNHGLVYRDGRWGLADAFDIAPYITFSGTLAMAITREGDSAATTVNLLKNCDNFG CCCCCCCCCEEEECCCCCCCHHHHHCCEEEECCEEEEEEEECCCCHHHHHHHHHHCCCCC YEKAEALHYLEQTMQKISTGWGNELAGCGHARDLLPTPSFVWLED HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure SATEKPVWVWLPGQAQPVHCGTFSLQGGVGTFHYDASYRAREDALSLDPFSLPFTRRVR CCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHC GAKETRQGGLFGVIRDASPEGFGLALLEQLRGTTLADPMLRLELSEGDSVGAIEVCDDIE CCHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHH SKLAFSAPTSEQLLAAIAKLPPERASSQAAREVKGMHGTSLGGERPKLTVLHKGQLWIAK HHHEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEE LQDRGDPPHAPLREFVAMRLAAQCGITAAEVEFVQQGEREILLVRRFDRHRDAMGNVFRS ECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH LYASAHTVLRLDTQTRGERQRSYVGFSHEIQRWCGLGDVDTREMQRELWRRMAFNALCGN HHHCCCEEEEECCHHCCHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC GDDHPRNHGLVYRDGRWGLADAFDIAPYITFSGTLAMAITREGDSAATTVNLLKNCDNFG CCCCCCCCCEEEECCCCCCCHHHHHCCEEEECCEEEEEEEECCCCHHHHHHHHHHCCCCC YEKAEALHYLEQTMQKISTGWGNELAGCGHARDLLPTPSFVWLED HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA