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The map label for this gene is intF [H]

Identifier: 91787418

GI number: 91787418

Start: 1581498

End: 1582820

Strand: Direct

Name: intF [H]

Synonym: Bpro_1526

Alternate gene names: 91787418

Gene position: 1581498-1582820 (Clockwise)

Preceding gene: 91787417

Following gene: 91787420

Centisome position: 30.41

GC content: 63.11

Gene sequence:

>1323_bases
ATGGCAAGGATTGCATTCACCGCCGGCCGGGTGGCCGGGTTCAAGTGCCCGCCTGAAAAGTCCCAGGTTTTTTTGTGGGA
CGCAGCCACCCCGGGGCTCGGGCTCAGGACAACAGCAGCCGGAAAACCGTCCTATGTGTTCCAGGGGCGCTATCAGGAAA
AGACCATTCGCGTGACCATCGGGAGCCCCGACGCATGGAGCATCCCCCAGGCTCAGGAAAAGGCCAGAGCGCTGCAGCGC
CTCATTGACGAAGGGCGCGATCCGCGAGACCTGAAGCGTGATGCCGTGGCCGCTGGTGCCGAAAGGAAGGCCGCCGCCGC
TGCCAAGGTGCAGGCCGACAAGGTGGCCTCGTTGACCGTGGGCGAAGTGTGGCAGACCTATCTGCAGGAAGGCAAGCCCA
AGCGCCGGGATGCGTGGAAACCCGGCTATCGTGCCGACCTCGAACTGATGGCCACGCCCGGTGGCGTGAAGAAGAAGCGA
GGGCAGGGCCTGACCCGCCAAGGCCCGATTTACCCGCTGCTGGCGCTGCAGATGACAGAGGTGAACGAGGACGCGCTGAA
GGCCTGGTTCGACCGCGAGTCCCTGGCCGGCAAGCACCAAGCCGCCCGCGCCTTCATGATGTTCAAGGGCTTTTTGCGCT
GGTGCTCTGCACGTCCGGCTTACCGTTCGCTGATTGACCGTGACGCTGGCAAGGCTGCCGCCATTGTGGAGAACCTGCCA
CAGGCCACACACCGCACCGACAAGCTGCTGAAAGGACAGGTGCAGGGCTGGTGGACTGGCGTGGAGCAACTTAGCAACCG
CACCGCGTCGGTTTACCTGCGGGCTTTGTTGCTGACTGGTGCCCGCCGCGAGGAAGTGGCCGCGCTGAAGTGGGGTGATG
TGGATTTTCAGTGGCGCAAGCTGACCCTAGCCGACAAGGTGGATGCCACGCGAACCATACCCCTGTCACCCTACATGGCG
CACATGCTGGCCGGTTTGCCAAGAGTAGGGGCGTTCGTGTTCGCCAGTGCCAGCAAGAGCGGCCACATCGTTGATGCCCG
CGACAGCATGCAAAAGGCCGTGACAGAGGCAGAGGTGGGGCACCTGACCTTCCACGGCTTGCGCCGCACATTTACACAGA
CGGGGCGAGGTGTTGTGCCCGCTGGCATCGTGGCCCAAATCCAAGGGCACAAGTCTAGTGCGACAGCCGAGGGCTACGAC
ATTCGGACGCTTGACGAACTGAGCCCCTACCTTGAGCAAATCGAGCGGCACATTCTGAGCCTTGCCGGTGTGCAGTTTGA
TGCCGGGGCTGTGCCTGGTGCGCTTCGCGTGGTAAACGGTTGA

Upstream 100 bases:

>100_bases
TGAACAGGCCAAGCGTTGATGGAAATTGATCAATATTCGGAAAATTCGCTTACATCCACCGTTACATCGTGGCGATGTAA
TCGCAATGAGAAGGTTCGAT

Downstream 100 bases:

>100_bases
CCCTGCGTTATTCAACGCTGGCGCTCACCTTGGACGGCCCATGCAATGCGAGGTTATGGCCATCTTTCGGCGTTCGAAAG
TGGTCTCGATGGCGCGGCGC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MARIAFTAGRVAGFKCPPEKSQVFLWDAATPGLGLRTTAAGKPSYVFQGRYQEKTIRVTIGSPDAWSIPQAQEKARALQR
LIDEGRDPRDLKRDAVAAGAERKAAAAAKVQADKVASLTVGEVWQTYLQEGKPKRRDAWKPGYRADLELMATPGGVKKKR
GQGLTRQGPIYPLLALQMTEVNEDALKAWFDRESLAGKHQAARAFMMFKGFLRWCSARPAYRSLIDRDAGKAAAIVENLP
QATHRTDKLLKGQVQGWWTGVEQLSNRTASVYLRALLLTGARREEVAALKWGDVDFQWRKLTLADKVDATRTIPLSPYMA
HMLAGLPRVGAFVFASASKSGHIVDARDSMQKAVTEAEVGHLTFHGLRRTFTQTGRGVVPAGIVAQIQGHKSSATAEGYD
IRTLDELSPYLEQIERHILSLAGVQFDAGAVPGALRVVNG

Sequences:

>Translated_440_residues
MARIAFTAGRVAGFKCPPEKSQVFLWDAATPGLGLRTTAAGKPSYVFQGRYQEKTIRVTIGSPDAWSIPQAQEKARALQR
LIDEGRDPRDLKRDAVAAGAERKAAAAAKVQADKVASLTVGEVWQTYLQEGKPKRRDAWKPGYRADLELMATPGGVKKKR
GQGLTRQGPIYPLLALQMTEVNEDALKAWFDRESLAGKHQAARAFMMFKGFLRWCSARPAYRSLIDRDAGKAAAIVENLP
QATHRTDKLLKGQVQGWWTGVEQLSNRTASVYLRALLLTGARREEVAALKWGDVDFQWRKLTLADKVDATRTIPLSPYMA
HMLAGLPRVGAFVFASASKSGHIVDARDSMQKAVTEAEVGHLTFHGLRRTFTQTGRGVVPAGIVAQIQGHKSSATAEGYD
IRTLDELSPYLEQIERHILSLAGVQFDAGAVPGALRVVNG
>Mature_439_residues
ARIAFTAGRVAGFKCPPEKSQVFLWDAATPGLGLRTTAAGKPSYVFQGRYQEKTIRVTIGSPDAWSIPQAQEKARALQRL
IDEGRDPRDLKRDAVAAGAERKAAAAAKVQADKVASLTVGEVWQTYLQEGKPKRRDAWKPGYRADLELMATPGGVKKKRG
QGLTRQGPIYPLLALQMTEVNEDALKAWFDRESLAGKHQAARAFMMFKGFLRWCSARPAYRSLIDRDAGKAAAIVENLPQ
ATHRTDKLLKGQVQGWWTGVEQLSNRTASVYLRALLLTGARREEVAALKWGDVDFQWRKLTLADKVDATRTIPLSPYMAH
MLAGLPRVGAFVFASASKSGHIVDARDSMQKAVTEAEVGHLTFHGLRRTFTQTGRGVVPAGIVAQIQGHKSSATAEGYDI
RTLDELSPYLEQIERHILSLAGVQFDAGAVPGALRVVNG

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=439, Percent_Identity=39.4077448747153, Blast_Score=285, Evalue=4e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48182; Mature: 48051

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIAFTAGRVAGFKCPPEKSQVFLWDAATPGLGLRTTAAGKPSYVFQGRYQEKTIRVTI
CCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEECCCCCCEEEEEEE
GSPDAWSIPQAQEKARALQRLIDEGRDPRDLKRDAVAAGAERKAAAAAKVQADKVASLTV
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GEVWQTYLQEGKPKRRDAWKPGYRADLELMATPGGVKKKRGQGLTRQGPIYPLLALQMTE
HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEEEEHH
VNEDALKAWFDRESLAGKHQAARAFMMFKGFLRWCSARPAYRSLIDRDAGKAAAIVENLP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCC
QATHRTDKLLKGQVQGWWTGVEQLSNRTASVYLRALLLTGARREEVAALKWGDVDFQWRK
HHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHEEEEECCCCCEEEE
LTLADKVDATRTIPLSPYMAHMLAGLPRVGAFVFASASKSGHIVDARDSMQKAVTEAEVG
EEEHHCCCCCEECCCCHHHHHHHHCCCHHHHEEEEECCCCCCEEECHHHHHHHHHHHHHH
HLTFHGLRRTFTQTGRGVVPAGIVAQIQGHKSSATAEGYDIRTLDELSPYLEQIERHILS
HHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LAGVQFDAGAVPGALRVVNG
HHCCCCCCCCCCCCEEECCC
>Mature Secondary Structure 
ARIAFTAGRVAGFKCPPEKSQVFLWDAATPGLGLRTTAAGKPSYVFQGRYQEKTIRVTI
CEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEECCCCCCEEEEEEE
GSPDAWSIPQAQEKARALQRLIDEGRDPRDLKRDAVAAGAERKAAAAAKVQADKVASLTV
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GEVWQTYLQEGKPKRRDAWKPGYRADLELMATPGGVKKKRGQGLTRQGPIYPLLALQMTE
HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEEEEHH
VNEDALKAWFDRESLAGKHQAARAFMMFKGFLRWCSARPAYRSLIDRDAGKAAAIVENLP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCC
QATHRTDKLLKGQVQGWWTGVEQLSNRTASVYLRALLLTGARREEVAALKWGDVDFQWRK
HHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHEEEEECCCCCEEEE
LTLADKVDATRTIPLSPYMAHMLAGLPRVGAFVFASASKSGHIVDARDSMQKAVTEAEVG
EEEHHCCCCCEECCCCHHHHHHHHCCCHHHHEEEEECCCCCCEEECHHHHHHHHHHHHHH
HLTFHGLRRTFTQTGRGVVPAGIVAQIQGHKSSATAEGYDIRTLDELSPYLEQIERHILS
HHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LAGVQFDAGAVPGALRVVNG
HHCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]