| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is dcd [H]
Identifier: 91787399
GI number: 91787399
Start: 1560440
End: 1561006
Strand: Direct
Name: dcd [H]
Synonym: Bpro_1505
Alternate gene names: 91787399
Gene position: 1560440-1561006 (Clockwise)
Preceding gene: 91787398
Following gene: 91787400
Centisome position: 30.01
GC content: 59.79
Gene sequence:
>567_bases ATGAGCATCAAAAGCGACAAATGGATACGCCGCATGGCAGAAAGCACCGGCATGATCGAGCCTTTCGAGCCCGGCCAGAT CCGCGAGGCCGATGGCAAGAAGATCATCAGCTACGGCACCTCAAGCTACGGCTACGATATCCGTTGCGCGCCCGAATTCA AGGTGTTCACCAACATCCACAGCACGGTGGTGGACCCGAAAAATTTCGATGAAAAAAGCTTTGTCGATTTCCACGGCGAC AGCTGCATCATCCCGCCCAACAGCTTCGCGCTGGCCCGCACGCTGGAGTATTTCCGCATCCCGCGCAACGTGCTGACCAT CTGCCTGGGCAAAAGCACCTACGCCCGCTGCGGCATCATCGTCAACGTCACGCCGTTTGAGCCCGAGTGGGAAGGCTACG TGACGCTGGAATTCTCCAATACCACCCCGCTGCCCGCCAAGATTTACGCGGGCGAAGGCTGCGCGCAGGTCCTGTTCTTC GAGAGCGACGAAGTGTGCGAGACCAGCTACAAGGACCGCGGCGGCAAGTACCAGGGGCAGCAGGGGGTGACGCTGCCCAA GGCGTGA
Upstream 100 bases:
>100_bases GCTGGCAGCTTCCATGGCTTGCCTACAATCCGGTATGGTGTTTCGCGCTACCGGGGCGCAAGCGTGAACCCCCCAATCAG CAATTTGAGGAACCTTCCGA
Downstream 100 bases:
>100_bases ACCGGCATTTTGATGCGCTTGTCCCGGGTGGACCCGGCAGGCCGGCGACCCCCGTTCATGGCGCGGCGCCGGCGGCCCGC CGTCCAGGTTCAGTGCGTCG
Product: deoxycytidine triphosphate deaminase
Products: NA
Alternate protein names: dCTP deaminase [H]
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSIKSDKWIRRMAESTGMIEPFEPGQIREADGKKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKNFDEKSFVDFHGD SCIIPPNSFALARTLEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFF ESDEVCETSYKDRGGKYQGQQGVTLPKA
Sequences:
>Translated_188_residues MSIKSDKWIRRMAESTGMIEPFEPGQIREADGKKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKNFDEKSFVDFHGD SCIIPPNSFALARTLEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFF ESDEVCETSYKDRGGKYQGQQGVTLPKA >Mature_187_residues SIKSDKWIRRMAESTGMIEPFEPGQIREADGKKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKNFDEKSFVDFHGDS CIIPPNSFALARTLEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFE SDEVCETSYKDRGGKYQGQQGVTLPKA
Specific function: De novo synthesis of thymidylate. [C]
COG id: COG0717
COG function: function code F; Deoxycytidine deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dCTP deaminase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011962 - InterPro: IPR008180 [H]
Pfam domain/function: PF00692 dUTPase [H]
EC number: =3.5.4.13 [H]
Molecular weight: Translated: 21112; Mature: 20981
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKSDKWIRRMAESTGMIEPFEPGQIREADGKKIISYGTSSYGYDIRCAPEFKVFTNIH CCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEECCCCEEEECHH STVVDPKNFDEKSFVDFHGDSCIIPPNSFALARTLEYFRIPRNVLTICLGKSTYARCGII HHCCCCCCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHCCHHHEEEEECCCCCCCCEEE VNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQGQ EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHCCCCCCCCC QGVTLPKA CCCCCCCC >Mature Secondary Structure SIKSDKWIRRMAESTGMIEPFEPGQIREADGKKIISYGTSSYGYDIRCAPEFKVFTNIH CCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEECCCCEEEECHH STVVDPKNFDEKSFVDFHGDSCIIPPNSFALARTLEYFRIPRNVLTICLGKSTYARCGII HHCCCCCCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHCCHHHEEEEECCCCCCCCEEE VNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQGQ EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHCCCCCCCCC QGVTLPKA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA