| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787214
Identifier: 91787214
GI number: 91787214
Start: 1357800
End: 1359173
Strand: Reverse
Name: 91787214
Synonym: Bpro_1318
Alternate gene names: NA
Gene position: 1359173-1357800 (Counterclockwise)
Preceding gene: 91787215
Following gene: 91787213
Centisome position: 26.14
GC content: 64.77
Gene sequence:
>1374_bases ATGACAACCTGGACGATCAAGACGGTCGATGCAGCGATCCGCAAGGCGAAGAAGGACGAGTGCGATGTGTGGCTCACCGA GGCGCGCCCGCGTGGCGAAGGCAGGCTGCGGCTGCGTGCGCGACCGGGTGGTCATGTCCTCTTCTACTTCCGCTACTCGT GTGAAGGCACACAGCACCAGCTCGACCTTGGCACTTACGACGAGAGCGGTCGCGCCGGCCTCACGCTCGGCGCCGCGCGC GCGAGCGCGGGAGAGCTGTCAAGGCTTTACCAGAGCGGCGTGCGCAATCTGCACAGCCATCTGGCACACGAGCGCGCTGC GCAGCGGGCACTGATCGAAGCCGCAGCCGCAAAGCGCAGGGAAGATGAAAAACAGGCTACGGCCGGTTCGCTGCAGGCGC TGCTCAAGGGCTACACGCAGCACCTGGAGCGACAGGGCAAGATGTCGGCCAAGGAAGTGGGCAACCTGTTCAAGCTTCAC GTGTTCGAGGCACATCCGCAACTCACCGCAAAGCGCGCGTCGGAAGTCGTGCAGCAAGACGTGAGCGCCACCCTGGCCGG GTTGATCAACCAGGGTAAGGGACGCACGGCCGCGAAACTGCGCAGTTATCTTTCCGCAGCATTCACAGCGGGCTTGCAAG CCGAAGGCGACCCGACAATCCATCCATCGCTGCACGGCTTTGCCCTCAAGATGAATCCGGCCGCACTGGTGCCGGCGAAG TCGCTCAGACAGTTCAATCGGGAGCGCGAGCGGGCGCTGAACGAGGACGAGCTGCGCGTCTTCCTGAAGGCGCTCGACGA GCGGCCGGGCCTTGCCACCGACGCGATCAGGCTCACGCTTTACCTGGGCGGGCAACGCCTGGCACAACTGCTGCGGCTCA AGCCCGCGCAGTTTGATCCGGATGGCCCTGCTGTCACGCTGCTCGACCCCAAGGGGAAACGTCTGCAGCCACGGCTGCAT GTGCTCCCGCTGACCGACCCCGCCCTGGCAATCGTCGAGCGCCTGATGCAGGCGAACGCCGACCATAAGTACCTGATCAG CAGCCGGGGCAAGGTGCCGGTGCGCGTCGAGACATTGAGCAAGCGGGTCCACGAAATCAGCACGGCCATGGTGAAAGCGA AGAAGGCACGTGCACCGTTCCAGATGTGCGATCTGCGCAGGACATGCGAGACGATGCTGGCCCGCATGGGCGTGTCACGC GACACGCGCGCCCAACTGCTGAGCCACGGCCTCAGCGGTGTTCAGCAAAAGCACTACGACCGCTACGACTACATGCCCGA GAAGCAGCGCACGCTGAAAGCCTGGGCGCGAAAGCTCGATGCGATTGCGAAGGGCGAGGCGCCGGGCAAGGTCGTGCCGC TGCGGAGGGGGTGA
Upstream 100 bases:
>100_bases GTCTGTCCATCTGTGACCAGCGGTCATACAGACACCATACAGACACCAGACAGACACCAGCGCAACCAAAGGACTGCGAA CAGACACGAAGGGGAAGGTC
Downstream 100 bases:
>100_bases GCCATGAAGCCCGTCAAGAAAACATTGCTCGACACCGAGCCTGAGCCGAGCGACGCCGAGCGCGTTGACGCGTTCCTGGA GGGGCTGAAGGAAAAGCGGC
Product: phage integrase
Products: NA
Alternate protein names: Phage Integrase; Integrase; Phage-Related Integrase; Phage Integrase Family Protein; Integrase/Recombinase Phage Integrase; Integrase Protein; Phage Integrase/Recombinase Protein
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MTTWTIKTVDAAIRKAKKDECDVWLTEARPRGEGRLRLRARPGGHVLFYFRYSCEGTQHQLDLGTYDESGRAGLTLGAAR ASAGELSRLYQSGVRNLHSHLAHERAAQRALIEAAAAKRREDEKQATAGSLQALLKGYTQHLERQGKMSAKEVGNLFKLH VFEAHPQLTAKRASEVVQQDVSATLAGLINQGKGRTAAKLRSYLSAAFTAGLQAEGDPTIHPSLHGFALKMNPAALVPAK SLRQFNRERERALNEDELRVFLKALDERPGLATDAIRLTLYLGGQRLAQLLRLKPAQFDPDGPAVTLLDPKGKRLQPRLH VLPLTDPALAIVERLMQANADHKYLISSRGKVPVRVETLSKRVHEISTAMVKAKKARAPFQMCDLRRTCETMLARMGVSR DTRAQLLSHGLSGVQQKHYDRYDYMPEKQRTLKAWARKLDAIAKGEAPGKVVPLRRG
Sequences:
>Translated_457_residues MTTWTIKTVDAAIRKAKKDECDVWLTEARPRGEGRLRLRARPGGHVLFYFRYSCEGTQHQLDLGTYDESGRAGLTLGAAR ASAGELSRLYQSGVRNLHSHLAHERAAQRALIEAAAAKRREDEKQATAGSLQALLKGYTQHLERQGKMSAKEVGNLFKLH VFEAHPQLTAKRASEVVQQDVSATLAGLINQGKGRTAAKLRSYLSAAFTAGLQAEGDPTIHPSLHGFALKMNPAALVPAK SLRQFNRERERALNEDELRVFLKALDERPGLATDAIRLTLYLGGQRLAQLLRLKPAQFDPDGPAVTLLDPKGKRLQPRLH VLPLTDPALAIVERLMQANADHKYLISSRGKVPVRVETLSKRVHEISTAMVKAKKARAPFQMCDLRRTCETMLARMGVSR DTRAQLLSHGLSGVQQKHYDRYDYMPEKQRTLKAWARKLDAIAKGEAPGKVVPLRRG >Mature_456_residues TTWTIKTVDAAIRKAKKDECDVWLTEARPRGEGRLRLRARPGGHVLFYFRYSCEGTQHQLDLGTYDESGRAGLTLGAARA SAGELSRLYQSGVRNLHSHLAHERAAQRALIEAAAAKRREDEKQATAGSLQALLKGYTQHLERQGKMSAKEVGNLFKLHV FEAHPQLTAKRASEVVQQDVSATLAGLINQGKGRTAAKLRSYLSAAFTAGLQAEGDPTIHPSLHGFALKMNPAALVPAKS LRQFNRERERALNEDELRVFLKALDERPGLATDAIRLTLYLGGQRLAQLLRLKPAQFDPDGPAVTLLDPKGKRLQPRLHV LPLTDPALAIVERLMQANADHKYLISSRGKVPVRVETLSKRVHEISTAMVKAKKARAPFQMCDLRRTCETMLARMGVSRD TRAQLLSHGLSGVQQKHYDRYDYMPEKQRTLKAWARKLDAIAKGEAPGKVVPLRRG
Specific function: Unknown
COG id: COG0582
COG function: function code L; Integrase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50763; Mature: 50632
Theoretical pI: Translated: 10.78; Mature: 10.78
Prosite motif: PS01204 REL_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTWTIKTVDAAIRKAKKDECDVWLTEARPRGEGRLRLRARPGGHVLFYFRYSCEGTQHQ CCEEEEHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCCEE LDLGTYDESGRAGLTLGAARASAGELSRLYQSGVRNLHSHLAHERAAQRALIEAAAAKRR EECCCCCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDEKQATAGSLQALLKGYTQHLERQGKMSAKEVGNLFKLHVFEAHPQLTAKRASEVVQQD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHHH VSATLAGLINQGKGRTAAKLRSYLSAAFTAGLQAEGDPTIHPSLHGFALKMNPAALVPAK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHCCHH SLRQFNRERERALNEDELRVFLKALDERPGLATDAIRLTLYLGGQRLAQLLRLKPAQFDP HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHEEEEEEECHHHHHHHHHCCCCCCCC DGPAVTLLDPKGKRLQPRLHVLPLTDPALAIVERLMQANADHKYLISSRGKVPVRVETLS CCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEHHHHH KRVHEISTAMVKAKKARAPFQMCDLRRTCETMLARMGVSRDTRAQLLSHGLSGVQQKHYD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC RYDYMPEKQRTLKAWARKLDAIAKGEAPGKVVPLRRG HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCC >Mature Secondary Structure TTWTIKTVDAAIRKAKKDECDVWLTEARPRGEGRLRLRARPGGHVLFYFRYSCEGTQHQ CEEEEHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCCEE LDLGTYDESGRAGLTLGAARASAGELSRLYQSGVRNLHSHLAHERAAQRALIEAAAAKRR EECCCCCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDEKQATAGSLQALLKGYTQHLERQGKMSAKEVGNLFKLHVFEAHPQLTAKRASEVVQQD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHHH VSATLAGLINQGKGRTAAKLRSYLSAAFTAGLQAEGDPTIHPSLHGFALKMNPAALVPAK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHCCHH SLRQFNRERERALNEDELRVFLKALDERPGLATDAIRLTLYLGGQRLAQLLRLKPAQFDP HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHEEEEEEECHHHHHHHHHCCCCCCCC DGPAVTLLDPKGKRLQPRLHVLPLTDPALAIVERLMQANADHKYLISSRGKVPVRVETLS CCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEHHHHH KRVHEISTAMVKAKKARAPFQMCDLRRTCETMLARMGVSRDTRAQLLSHGLSGVQQKHYD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC RYDYMPEKQRTLKAWARKLDAIAKGEAPGKVVPLRRG HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA