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The map label for this gene is rpoE [H]

Identifier: 91787111

GI number: 91787111

Start: 1258237

End: 1259172

Strand: Reverse

Name: rpoE [H]

Synonym: Bpro_1214

Alternate gene names: 91787111

Gene position: 1259172-1258237 (Counterclockwise)

Preceding gene: 91787114

Following gene: 91787109

Centisome position: 24.21

GC content: 65.28

Gene sequence:

>936_bases
ATGGACCGCATGAACCTTTCCGCGCTCACCCTTCCCGATCCCGACTTTCCGCAGCTCATGGGCCAGCTGCGCGCCCGCTT
GCACCGCTACTGCGCGCGCATGACGGGGTCGATGCTGGACGGCGAGGACGTGGTGCAGGAAACCTTGATCAAGGCCAACG
AGAGCTACGATGCCCGCACAGTGCAGAACGTGGAGGGCTGGTTGTTTCGCATAGCGCACAACACAGCGATGGACTTTCTG
CGCCGGCGCAAACGGGAACAAGGGGTGTTTGCGGAGGAAGACGTTGAGGCGATGGCCGACACACTGACCGACGCCGATCG
GCGGCACGTTGCCACAGCGGCATTGCGCACGTTCATGCGCCTGCCCCTGGCGCAGCGCAGCACGGTGATCCTGGCGGATG
TCCTGGGCTACGCCCTGGACGAGGCGGCCGAAGTGATGGGCACGACCGTGCCAGCCGTCAAGGCGGCGTTGCATCGTGGC
AGGGCGCGCCTGCGCGAGTTGTCGCACCAGCCGGCAGACGCGGCTCCGGCGCCCATCTTGTCGGCCAGCGACCAGGCTTT
GCTGACCGCCTACGCCGAGCGCTTCAACGCCCGCGACTTCGACGGCCTGCGCGAAATGCTCGCTCAGGACGTTCGGCTGG
ACCTGGTGGCGCGGCGCAAGCCGATGCAGGCCCGCGGCGGCGAATATTTCACCAACTATGCCAAGACGCAGGGTTTACGC
ATGACACCCATGAGCCTGGAAGGCCGCCCTGCCTTGTGGGTGAACACCGAAGCCGATGAAGGAGCGGGTGCGGCAGCCTA
TGTGGTTGTGCTGGACTGGAGAGACGGCAAGGTTGCGGCGATCAGGGACTTCCGGTATGCACGGTATGCAATGGAACCGC
TGTCGGGCGCGACGGAGCCCAAATGGCTCCGCCTTCAGCGCGGAGTTAGGCGTTAA

Upstream 100 bases:

>100_bases
CGCATCCTTTTGCGCCTGCCGATCGTCTCGTTTGTAACGCGACCTTTTGACAGCACAAAAGCACCACGCCGATCACAATG
CCTTTTTCAGGACGCACACC

Downstream 100 bases:

>100_bases
CTCGACGACTCCGTTGTGTAAGTAGTCAACCATGGCGGCCTTTCGTTCCTATGACGTTCGTAATCCAAGTTCTTAAAGGT
GCCCGCTTGAAAGACACGGC

Product: FecI-like sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDRMNLSALTLPDPDFPQLMGQLRARLHRYCARMTGSMLDGEDVVQETLIKANESYDARTVQNVEGWLFRIAHNTAMDFL
RRRKREQGVFAEEDVEAMADTLTDADRRHVATAALRTFMRLPLAQRSTVILADVLGYALDEAAEVMGTTVPAVKAALHRG
RARLRELSHQPADAAPAPILSASDQALLTAYAERFNARDFDGLREMLAQDVRLDLVARRKPMQARGGEYFTNYAKTQGLR
MTPMSLEGRPALWVNTEADEGAGAAAYVVVLDWRDGKVAAIRDFRYARYAMEPLSGATEPKWLRLQRGVRR

Sequences:

>Translated_311_residues
MDRMNLSALTLPDPDFPQLMGQLRARLHRYCARMTGSMLDGEDVVQETLIKANESYDARTVQNVEGWLFRIAHNTAMDFL
RRRKREQGVFAEEDVEAMADTLTDADRRHVATAALRTFMRLPLAQRSTVILADVLGYALDEAAEVMGTTVPAVKAALHRG
RARLRELSHQPADAAPAPILSASDQALLTAYAERFNARDFDGLREMLAQDVRLDLVARRKPMQARGGEYFTNYAKTQGLR
MTPMSLEGRPALWVNTEADEGAGAAAYVVVLDWRDGKVAAIRDFRYARYAMEPLSGATEPKWLRLQRGVRR
>Mature_311_residues
MDRMNLSALTLPDPDFPQLMGQLRARLHRYCARMTGSMLDGEDVVQETLIKANESYDARTVQNVEGWLFRIAHNTAMDFL
RRRKREQGVFAEEDVEAMADTLTDADRRHVATAALRTFMRLPLAQRSTVILADVLGYALDEAAEVMGTTVPAVKAALHRG
RARLRELSHQPADAAPAPILSASDQALLTAYAERFNARDFDGLREMLAQDVRLDLVARRKPMQARGGEYFTNYAKTQGLR
MTPMSLEGRPALWVNTEADEGAGAAAYVVVLDWRDGKVAAIRDFRYARYAMEPLSGATEPKWLRLQRGVRR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 34924; Mature: 34924

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRMNLSALTLPDPDFPQLMGQLRARLHRYCARMTGSMLDGEDVVQETLIKANESYDART
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHH
VQNVEGWLFRIAHNTAMDFLRRRKREQGVFAEEDVEAMADTLTDADRRHVATAALRTFMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPLAQRSTVILADVLGYALDEAAEVMGTTVPAVKAALHRGRARLRELSHQPADAAPAPIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SASDQALLTAYAERFNARDFDGLREMLAQDVRLDLVARRKPMQARGGEYFTNYAKTQGLR
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCCE
MTPMSLEGRPALWVNTEADEGAGAAAYVVVLDWRDGKVAAIRDFRYARYAMEPLSGATEP
ECCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCC
KWLRLQRGVRR
HHHHHHHHCCC
>Mature Secondary Structure
MDRMNLSALTLPDPDFPQLMGQLRARLHRYCARMTGSMLDGEDVVQETLIKANESYDART
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHH
VQNVEGWLFRIAHNTAMDFLRRRKREQGVFAEEDVEAMADTLTDADRRHVATAALRTFMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPLAQRSTVILADVLGYALDEAAEVMGTTVPAVKAALHRGRARLRELSHQPADAAPAPIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SASDQALLTAYAERFNARDFDGLREMLAQDVRLDLVARRKPMQARGGEYFTNYAKTQGLR
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCCE
MTPMSLEGRPALWVNTEADEGAGAAAYVVVLDWRDGKVAAIRDFRYARYAMEPLSGATEP
ECCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCC
KWLRLQRGVRR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]