| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787109
Identifier: 91787109
GI number: 91787109
Start: 1255852
End: 1256919
Strand: Reverse
Name: 91787109
Synonym: Bpro_1212
Alternate gene names: NA
Gene position: 1256919-1255852 (Counterclockwise)
Preceding gene: 91787111
Following gene: 91787107
Centisome position: 24.17
GC content: 62.08
Gene sequence:
>1068_bases ATGAGCGAGATTACACGAGTTGGCGTTGATCTGGCAAAGCGCGTCATTCAAGTTCACGCCGTTGACGGTGCTGGCCAGCG GGTTACCAGTCGAGCGCTGGTGCGCGACAAGTTCATTACCTGGTGTGCTCAATTGCCCGCAGGCTGTATGGTTGCCATGG AAGCCAGCTCCAGTGCCCACCACTGGGCTCGTCGGCTGGTGGCATCAGGGCTGGATGCGCGCATCATCGCCGCGCATTTG GTGGCGCCCTACCGATTGCAGGGCAAGTCGGGTAAGAACGACGCCAACGATGCTGCCGCCATCTGCGAAGCCGCCTCGCG CCCGCAAATGCATTTCGTGCCCGTCAAAACTGTCGATCAGCAAAGCATGCTGTGCATCCATCGCCTGCGTGAAGGCTTCA AGGCCGAGCGCACTGCCTGCGTCAACCGGATTCGCGGTCTGCTGGCCGAGTTTGGTCTGGTGTTCGCCCAGAAGCCCGCC GTGCTACGCCAGGCCTTACCCGATGTGATTGAAGACGCAAGCAACGAGTTGGGGGCCCTGGCCCGGCTTGCGTTGCAGCG TGCCTGGGCGCAGTGGCAGGAACTCGATGCGCATCTGGCCTGGTGCGACGAACGCATTGCAGCCCACCTCAAGGGCAACG AGCAGGTGCGCCAAGCTGAACAACTGATGGGCGTGGGACCGGTGACGGCCTCCGCCATCGTCGCGACGGTGGGAGACTTC AAGCAGTTTCGGGACGGCGCGCAGTTTGGCGCCTGGCTGGGTTTGACGCCACGACAGAACTCCAGTGGAGGAAAGAACAG CCTGGGCTCCATCACCAAGCGCGGCGACATGTATTTGCGCATGCTGTTGATTCAGGGTGCCAAGTCTGCCGTGATGACGG CTCAGAAACGTTCCGACCCGATCTCCAAATGGGCACACCAGCTGCGCGAGAAATCGGGCTGGCAAAAGGCGGTGGTGGCC CTGGCCAACAAGAACGCACGCATCCTGTGGGCGGTGTTCGTGCGGGGCAAACCGTTTGATGCGCGCCATGTAAGTGTCAA GCCAGGCATGGCGGGCGCAGCGGCGTAG
Upstream 100 bases:
>100_bases TGTAAAGAATACGAAGGGACTTCCCACTTCCGGGTAACGGCATCGAGTGCCAAGATTGGTTTTGGAAAGTCAATCTGAAA CCTTTGGAAGGAGAAGTCCC
Downstream 100 bases:
>100_bases CGCCGTCAAAAAAAAAGTTGTTCGTTTCCTTGCAAGACGTGAGTTCGAAGATGCAGTAAACAGGTCAGACCGGCAGCGGG CAAGCTCGACTAACCCTTTG
Product: transposase IS116/IS110/IS902
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSEITRVGVDLAKRVIQVHAVDGAGQRVTSRALVRDKFITWCAQLPAGCMVAMEASSSAHHWARRLVASGLDARIIAAHL VAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKTVDQQSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPA VLRQALPDVIEDASNELGALARLALQRAWAQWQELDAHLAWCDERIAAHLKGNEQVRQAEQLMGVGPVTASAIVATVGDF KQFRDGAQFGAWLGLTPRQNSSGGKNSLGSITKRGDMYLRMLLIQGAKSAVMTAQKRSDPISKWAHQLREKSGWQKAVVA LANKNARILWAVFVRGKPFDARHVSVKPGMAGAAA
Sequences:
>Translated_355_residues MSEITRVGVDLAKRVIQVHAVDGAGQRVTSRALVRDKFITWCAQLPAGCMVAMEASSSAHHWARRLVASGLDARIIAAHL VAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKTVDQQSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPA VLRQALPDVIEDASNELGALARLALQRAWAQWQELDAHLAWCDERIAAHLKGNEQVRQAEQLMGVGPVTASAIVATVGDF KQFRDGAQFGAWLGLTPRQNSSGGKNSLGSITKRGDMYLRMLLIQGAKSAVMTAQKRSDPISKWAHQLREKSGWQKAVVA LANKNARILWAVFVRGKPFDARHVSVKPGMAGAAA >Mature_354_residues SEITRVGVDLAKRVIQVHAVDGAGQRVTSRALVRDKFITWCAQLPAGCMVAMEASSSAHHWARRLVASGLDARIIAAHLV APYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKTVDQQSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPAV LRQALPDVIEDASNELGALARLALQRAWAQWQELDAHLAWCDERIAAHLKGNEQVRQAEQLMGVGPVTASAIVATVGDFK QFRDGAQFGAWLGLTPRQNSSGGKNSLGSITKRGDMYLRMLLIQGAKSAVMTAQKRSDPISKWAHQLREKSGWQKAVVAL ANKNARILWAVFVRGKPFDARHVSVKPGMAGAAA
Specific function: Required for the transposition of an insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 38618; Mature: 38487
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEITRVGVDLAKRVIQVHAVDGAGQRVTSRALVRDKFITWCAQLPAGCMVAMEASSSAH CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH HWARRLVASGLDARIIAAHLVAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKTVDQ HHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCH QSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPAVLRQALPDVIEDASNELGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ARLALQRAWAQWQELDAHLAWCDERIAAHLKGNEQVRQAEQLMGVGPVTASAIVATVGDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH KQFRDGAQFGAWLGLTPRQNSSGGKNSLGSITKRGDMYLRMLLIQGAKSAVMTAQKRSDP HHHHCCHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH ISKWAHQLREKSGWQKAVVALANKNARILWAVFVRGKPFDARHVSVKPGMAGAAA HHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCC >Mature Secondary Structure SEITRVGVDLAKRVIQVHAVDGAGQRVTSRALVRDKFITWCAQLPAGCMVAMEASSSAH CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH HWARRLVASGLDARIIAAHLVAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKTVDQ HHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCH QSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPAVLRQALPDVIEDASNELGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ARLALQRAWAQWQELDAHLAWCDERIAAHLKGNEQVRQAEQLMGVGPVTASAIVATVGDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH KQFRDGAQFGAWLGLTPRQNSSGGKNSLGSITKRGDMYLRMLLIQGAKSAVMTAQKRSDP HHHHCCHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH ISKWAHQLREKSGWQKAVVALANKNARILWAVFVRGKPFDARHVSVKPGMAGAAA HHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]