| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is thiD [C]
Identifier: 91787032
GI number: 91787032
Start: 1172806
End: 1173813
Strand: Reverse
Name: thiD [C]
Synonym: Bpro_1134
Alternate gene names: 91787032
Gene position: 1173813-1172806 (Counterclockwise)
Preceding gene: 91787045
Following gene: 91787031
Centisome position: 22.57
GC content: 61.11
Gene sequence:
>1008_bases ATGCGGCGTTGCTTATTCGCGTACAAGGCAAAATCGCAGCCTATGGCAAACCCCAACACCTCTTCACTGGACAGCCGGCA ACTGCAAACCGAGGACAGCGACGCGTCTCCGGCATGCGTCATGACCTTCAATGCCAATGATCCGAGCGGAGCAGGTGGAC TGACGGCCGACATCGCAGCGATCACCTCGGCGGGGGCTCATCCACTGGCTGTCGTCACCGGCGCGTACGTGCGCGACACC GCCGAGATTTTTGACCATTTCTCATTCGACGAAGAGGCTGTCACCGACCAGGCGCGATCCGCACTCGAAGACATGCCGGT GTCGGCCATCAAGGTCGGTTTTGTCGGCAGCCCGGAGAACATCAGCACCATCGCCGAGATCGCGACCGACTATGCCGATG TACCGCTTATCGCTTACATGCCCAACCTGTCATGGTGGGACGAAAGCGAAATTGACAGCTACCTCGATGCCTTTCGTGAG TTGATGCTGCCGCAGACGACAGTGTTGGTCGGCAACCACAGCAGCCTGTGGCGCTGGTTGCTGCCGGACTGGCCGGGCGA GCGCAACCCCTCGGCTCGCGACATTGCCAAGGCTGCGGCCGACCTGGGCGTGCCCTACACGCTGGTGACCGGCATTCCCC TGCCCGACCAGTTCATCGACAACGTGCTGGCGACTCCGCAAGCCGTTTTGTACAGTGAAAAATTCGAGCGCTTTGAGGCG GTATTTGCCGGCGCCGGCGAAACGCTGTCTGCCGCACTCTCGGCCCTGCTGGCCAATGGCCACGATCTGCAGGCGGCCAC CGCCGAAGCCCTGACCTATCTGGACCACAGCCTGGATGCCGGTTTTCACCCCGGCATGGGCAACATCGTGCCTGACCGCC TGTTCTGGGCGCAGGCCGATGTCGATGATGAAGAATCCGAAGACGAAGCGGGCGACACGCCCGACGATGCCGCACTGACA TCCAAGCCTCCTTTTGACCTGCCGCCCAATGGAACCACAAAACATTAA
Upstream 100 bases:
>100_bases AGCAGCTTCATCATAAATCCACCCACAGATCAAACACATCCACGTCATTGATTGAGTCACAGCTTAAGTTGCCTTCGAAT AGAATGCAACAATTGTATCG
Downstream 100 bases:
>100_bases GCCCCACACCCCCGAGCTCTCCCGCAACACCGCGCTGTTCGAGCGCGCCAAAAAGTTGATCCCCGGCGGGGTGAATTCGC CGGTCAGGGCGTTCAAGGCC
Product: putative phosphomethylpyrimidine kinase
Products: ADP; 4-amino-5-phosphomethyl-2-methylpyrimidine
Alternate protein names: Hydroxymethylpyrimidine Kinase; Hydroxymethylpyrimidine/Phosphomethylpyrimidine Kinase; Phosphomethylpyrimidine Kinase Family Protein; Bifunctional ThiED Protein; Bifunctional Thiamine Biosynthesis ThiD; Adenine Phosphoribosyltransferase; Phosphomethylpyrimidine Kinase Superfamily
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MRRCLFAYKAKSQPMANPNTSSLDSRQLQTEDSDASPACVMTFNANDPSGAGGLTADIAAITSAGAHPLAVVTGAYVRDT AEIFDHFSFDEEAVTDQARSALEDMPVSAIKVGFVGSPENISTIAEIATDYADVPLIAYMPNLSWWDESEIDSYLDAFRE LMLPQTTVLVGNHSSLWRWLLPDWPGERNPSARDIAKAAADLGVPYTLVTGIPLPDQFIDNVLATPQAVLYSEKFERFEA VFAGAGETLSAALSALLANGHDLQAATAEALTYLDHSLDAGFHPGMGNIVPDRLFWAQADVDDEESEDEAGDTPDDAALT SKPPFDLPPNGTTKH
Sequences:
>Translated_335_residues MRRCLFAYKAKSQPMANPNTSSLDSRQLQTEDSDASPACVMTFNANDPSGAGGLTADIAAITSAGAHPLAVVTGAYVRDT AEIFDHFSFDEEAVTDQARSALEDMPVSAIKVGFVGSPENISTIAEIATDYADVPLIAYMPNLSWWDESEIDSYLDAFRE LMLPQTTVLVGNHSSLWRWLLPDWPGERNPSARDIAKAAADLGVPYTLVTGIPLPDQFIDNVLATPQAVLYSEKFERFEA VFAGAGETLSAALSALLANGHDLQAATAEALTYLDHSLDAGFHPGMGNIVPDRLFWAQADVDDEESEDEAGDTPDDAALT SKPPFDLPPNGTTKH >Mature_335_residues MRRCLFAYKAKSQPMANPNTSSLDSRQLQTEDSDASPACVMTFNANDPSGAGGLTADIAAITSAGAHPLAVVTGAYVRDT AEIFDHFSFDEEAVTDQARSALEDMPVSAIKVGFVGSPENISTIAEIATDYADVPLIAYMPNLSWWDESEIDSYLDAFRE LMLPQTTVLVGNHSSLWRWLLPDWPGERNPSARDIAKAAADLGVPYTLVTGIPLPDQFIDNVLATPQAVLYSEKFERFEA VFAGAGETLSAALSALLANGHDLQAATAEALTYLDHSLDAGFHPGMGNIVPDRLFWAQADVDDEESEDEAGDTPDDAALT SKPPFDLPPNGTTKH
Specific function: Catalyzes The Phosphorylation Of Hmp-P To Hmp-Pp. [C]
COG id: COG0351
COG function: function code H; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.1.49; 2.7.4.7
Molecular weight: Translated: 35980; Mature: 35980
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRCLFAYKAKSQPMANPNTSSLDSRQLQTEDSDASPACVMTFNANDPSGAGGLTADIAA CCCEEEEHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH ITSAGAHPLAVVTGAYVRDTAEIFDHFSFDEEAVTDQARSALEDMPVSAIKVGFVGSPEN HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHH ISTIAEIATDYADVPLIAYMPNLSWWDESEIDSYLDAFRELMLPQTTVLVGNHSSLWRWL HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHC LPDWPGERNPSARDIAKAAADLGVPYTLVTGIPLPDQFIDNVLATPQAVLYSEKFERFEA CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHH VFAGAGETLSAALSALLANGHDLQAATAEALTYLDHSLDAGFHPGMGNIVPDRLFWAQAD HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECC VDDEESEDEAGDTPDDAALTSKPPFDLPPNGTTKH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRRCLFAYKAKSQPMANPNTSSLDSRQLQTEDSDASPACVMTFNANDPSGAGGLTADIAA CCCEEEEHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH ITSAGAHPLAVVTGAYVRDTAEIFDHFSFDEEAVTDQARSALEDMPVSAIKVGFVGSPEN HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHH ISTIAEIATDYADVPLIAYMPNLSWWDESEIDSYLDAFRELMLPQTTVLVGNHSSLWRWL HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHC LPDWPGERNPSARDIAKAAADLGVPYTLVTGIPLPDQFIDNVLATPQAVLYSEKFERFEA CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHH VFAGAGETLSAALSALLANGHDLQAATAEALTYLDHSLDAGFHPGMGNIVPDRLFWAQAD HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECC VDDEESEDEAGDTPDDAALTSKPPFDLPPNGTTKH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; 4-amino-5-hydroxymethyl-2-methylpyrimidine
Specific reaction: ATP + 4-amino-5-hydroxymethyl-2-methylpyrimidine = ADP + 4-amino-5-phosphomethyl-2-methylpyrimidine
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA