The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is yggU [C]

Identifier: 91787002

GI number: 91787002

Start: 1137632

End: 1137973

Strand: Reverse

Name: yggU [C]

Synonym: Bpro_1104

Alternate gene names: 91787002

Gene position: 1137973-1137632 (Counterclockwise)

Preceding gene: 91787003

Following gene: 91786994

Centisome position: 21.88

GC content: 63.74

Gene sequence:

>342_bases
ATGGCTACCATACCGCCTGACGCGCCCTTTCTGCGGATTGAAAAGAACGGCGATGTGCTGGTGGATGTGCATGTAGTTCC
CAATGCCGCCAAAACACAGCCCGTGGGCCTGCATGGCGAACCCGGCCAGCTGGCGTTGCGCCTGCGGCTGCAGGTGCCGC
CGGTAGACGGCAAGGCCAATCAGGCGCTGATCAGATGGCTGGCCCATAGCCTGGGGGTTCCCCAAAATGCTATCACGCCG
GTGCGTGGAGAAACATCAAGGCGCAAGCAATTGCGGGTGAGCGCAGCCGTGGCAAGCCGGGCCGCCTGGGACGACCTGGT
GGCGGCCATCCCGTCATCCTGA

Upstream 100 bases:

>100_bases
AAAGCCCGATGTCGCAAGATATCGGGCTTTTTTCATGCCGACCACCTTCCAGCCACTACCACCTGCCCGCCCCTGCTGAT
CCAGCCGTCAAACCATCACC

Downstream 100 bases:

>100_bases
CATTTCATTCCCGGGACATGAAAGCAAGGAGATCGATTGCCATGCTTTCAGGAGCCAATCAGACCCCGCTCCCCTTGGAC
TAACTAACCACCTGTCTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MATIPPDAPFLRIEKNGDVLVDVHVVPNAAKTQPVGLHGEPGQLALRLRLQVPPVDGKANQALIRWLAHSLGVPQNAITP
VRGETSRRKQLRVSAAVASRAAWDDLVAAIPSS

Sequences:

>Translated_113_residues
MATIPPDAPFLRIEKNGDVLVDVHVVPNAAKTQPVGLHGEPGQLALRLRLQVPPVDGKANQALIRWLAHSLGVPQNAITP
VRGETSRRKQLRVSAAVASRAAWDDLVAAIPSS
>Mature_112_residues
ATIPPDAPFLRIEKNGDVLVDVHVVPNAAKTQPVGLHGEPGQLALRLRLQVPPVDGKANQALIRWLAHSLGVPQNAITPV
RGETSRRKQLRVSAAVASRAAWDDLVAAIPSS

Specific function: Unknown

COG id: COG1872

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0235 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005228
- InterPro:   IPR003746 [H]

Pfam domain/function: PF02594 DUF167 [H]

EC number: NA

Molecular weight: Translated: 12046; Mature: 11915

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIPPDAPFLRIEKNGDVLVDVHVVPNAAKTQPVGLHGEPGQLALRLRLQVPPVDGKAN
CCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCH
QALIRWLAHSLGVPQNAITPVRGETSRRKQLRVSAAVASRAAWDDLVAAIPSS
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATIPPDAPFLRIEKNGDVLVDVHVVPNAAKTQPVGLHGEPGQLALRLRLQVPPVDGKAN
CCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCH
QALIRWLAHSLGVPQNAITPVRGETSRRKQLRVSAAVASRAAWDDLVAAIPSS
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA