| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is mpl [H]
Identifier: 91786994
GI number: 91786994
Start: 1129349
End: 1130776
Strand: Reverse
Name: mpl [H]
Synonym: Bpro_1096
Alternate gene names: 91786994
Gene position: 1130776-1129349 (Counterclockwise)
Preceding gene: 91787002
Following gene: 91786988
Centisome position: 21.74
GC content: 65.41
Gene sequence:
>1428_bases ATGCATATACATATCCTGGGAATTTGCGGCACCTTCATGGGCGGCCTCGCCGCGCTGGCACGGGAGGCGGGGCACAAGGT GACGGGCTGCGACACGGGCGTTTATCCGCCCATGAGCGACCAGCTGCGCGGCTTGGGCATTGAACTGATTGAGGGTTACA GCGCCGACCAGCTGGCCTTCGGGCCCGACGTGTTCGTGATCGGCAATGTGGTGTCTCGCGCCCGCGGGCCCGACGGCAGC CCCAAATACCCTTTGATGGAAGCCATCCTGAACAGCGGCCGGCCCTACACGAGCGGCCCGCAATGGCTTTCGGGCCATGT GCTGCACCATCCCACCCACCACGCGACCGGGCCGCGCCATGTGCTGGCTGTGGCAGGTACCCATGGCAAAACCACGACCA CGGCCATGCTGACCTGGATCCTCGAGCAAGCGGGGCTGCAACCGGGCTTCCTGGTCGGCGGCGTCCCGCTGAATTTTGGT GTCTCGGCCCGGCTGGGCGAAGGCAACACCTTTGTGATCGAAGCCGACGAGTACGACACGGCGTTTTTTGACAAGCGCAG CAAGTTCGTGCACTACCGCCCGCGCACCGCCATTCTGAACAACCTGGAGTTTGACCACGCCGATATCTTTGATGACCTGG CGGACATCGAGCGGCAATTTCAACACCTGGTGCGCACGGTGCCCTCACAGGGCCGCATCGTGGTGAATGCCGGTGAGGAA AGCCTGCGGCGCGTGCTGGCCCAGGGCTGCTGGAGTGAGCAGGTACTCTTCGGCAACAGCCCGCTGAATCAAAGCGGCTT CACCGCCCAGGGCGAACCGAACGACTTCAAGGTGCTCAAGGCCGGCCAGGCAGTGGCCCACGTCCAGTGGGGCATCAGCG GGGTCCACAACCAGCTCAATGCCCTGGCCGCCATCGCCGCCGCAGAGCACGTGGGCGTGCCACCCGAAGTGGCCGCCCGG GCGCTGGCCGAGTTCCAGAACGTCAAGCGCCGCATGGAAGTGCGCGGCGTGGTTCATGCGCACGGTGGCGACATCACGGT GTACGACGATTTCGCCCACCACCCCACGGCCATCCACACCACCGTGGACGGCCTGCGCCGACAGCTCAAGGGGGCCGGAA AAGACGGAGACCGCATCCTGGCCATCTTTGAGCCGCGCAGCAACACCATGAAGCTGGGCAGCATGACGGCGCAACTGCCC TGGAGCCTGGAGCAGGCCGACCTGGCGTTTTGCCACGCTGGCGGGCTGGACTGGGATGCGCGCGCTGCGCTGATGCCGAT GGGCGCACGCGCCCAGGTCGCTGACAACATCGACCAGCTTGTGGCGCAGGTCAAAGCCTCAGCCCGGCCGGGCGACCATT TGCTGTGCATGAGCAATGGCGGGTTTGGCGGGATTCACGCGAGGCTGCTGGAAGCGCTCAAGCCCTGA
Upstream 100 bases:
>100_bases TACTCCGAATGGGCTGAAGGCATTTTTCTTTTGAAAGCGGGAATCCCGCAAGCCCCGGCGATGACAAAGTCCATGAGAGC CCTGCCTAAAATACAGCCCC
Downstream 100 bases:
>100_bases AGTACGGCGCTCACGGGCAGCGCCAGTAACTCTTGTCGGAAATTCCGGATCGCCTTCGGACCGCGAACGGTGGACAGCGA AACGGGCGATGCCCCAGCGC
Product: UDP-N-acetylmuramate
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MHIHILGICGTFMGGLAALAREAGHKVTGCDTGVYPPMSDQLRGLGIELIEGYSADQLAFGPDVFVIGNVVSRARGPDGS PKYPLMEAILNSGRPYTSGPQWLSGHVLHHPTHHATGPRHVLAVAGTHGKTTTTAMLTWILEQAGLQPGFLVGGVPLNFG VSARLGEGNTFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVPSQGRIVVNAGEE SLRRVLAQGCWSEQVLFGNSPLNQSGFTAQGEPNDFKVLKAGQAVAHVQWGISGVHNQLNALAAIAAAEHVGVPPEVAAR ALAEFQNVKRRMEVRGVVHAHGGDITVYDDFAHHPTAIHTTVDGLRRQLKGAGKDGDRILAIFEPRSNTMKLGSMTAQLP WSLEQADLAFCHAGGLDWDARAALMPMGARAQVADNIDQLVAQVKASARPGDHLLCMSNGGFGGIHARLLEALKP
Sequences:
>Translated_475_residues MHIHILGICGTFMGGLAALAREAGHKVTGCDTGVYPPMSDQLRGLGIELIEGYSADQLAFGPDVFVIGNVVSRARGPDGS PKYPLMEAILNSGRPYTSGPQWLSGHVLHHPTHHATGPRHVLAVAGTHGKTTTTAMLTWILEQAGLQPGFLVGGVPLNFG VSARLGEGNTFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVPSQGRIVVNAGEE SLRRVLAQGCWSEQVLFGNSPLNQSGFTAQGEPNDFKVLKAGQAVAHVQWGISGVHNQLNALAAIAAAEHVGVPPEVAAR ALAEFQNVKRRMEVRGVVHAHGGDITVYDDFAHHPTAIHTTVDGLRRQLKGAGKDGDRILAIFEPRSNTMKLGSMTAQLP WSLEQADLAFCHAGGLDWDARAALMPMGARAQVADNIDQLVAQVKASARPGDHLLCMSNGGFGGIHARLLEALKP >Mature_475_residues MHIHILGICGTFMGGLAALAREAGHKVTGCDTGVYPPMSDQLRGLGIELIEGYSADQLAFGPDVFVIGNVVSRARGPDGS PKYPLMEAILNSGRPYTSGPQWLSGHVLHHPTHHATGPRHVLAVAGTHGKTTTTAMLTWILEQAGLQPGFLVGGVPLNFG VSARLGEGNTFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVPSQGRIVVNAGEE SLRRVLAQGCWSEQVLFGNSPLNQSGFTAQGEPNDFKVLKAGQAVAHVQWGISGVHNQLNALAAIAAAEHVGVPPEVAAR ALAEFQNVKRRMEVRGVVHAHGGDITVYDDFAHHPTAIHTTVDGLRRQLKGAGKDGDRILAIFEPRSNTMKLGSMTAQLP WSLEQADLAFCHAGGLDWDARAALMPMGARAQVADNIDQLVAQVKASARPGDHLLCMSNGGFGGIHARLLEALKP
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=478, Percent_Identity=54.18410041841, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1786279, Length=280, Percent_Identity=33.2142857142857, Blast_Score=125, Evalue=4e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 51072; Mature: 51072
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIHILGICGTFMGGLAALAREAGHKVTGCDTGVYPPMSDQLRGLGIELIEGYSADQLAF CEEEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCHHEECCCCCCCEEC GPDVFVIGNVVSRARGPDGSPKYPLMEAILNSGRPYTSGPQWLSGHVLHHPTHHATGPRH CCCEEEECHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCE VLAVAGTHGKTTTTAMLTWILEQAGLQPGFLVGGVPLNFGVSARLGEGNTFVIEADEYDT EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCEEEEECCCCCC AFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVPSQGRIVVNAGEE HHHHCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH SLRRVLAQGCWSEQVLFGNSPLNQSGFTAQGEPNDFKVLKAGQAVAHVQWGISGVHNQLN HHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHCHHHHHHHHH ALAAIAAAEHVGVPPEVAARALAEFQNVKRRMEVRGVVHAHGGDITVYDDFAHHPTAIHT HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCCCHHH TVDGLRRQLKGAGKDGDRILAIFEPRSNTMKLGSMTAQLPWSLEQADLAFCHAGGLDWDA HHHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCEEECCCCCCCHHCEEEEECCCCCCCC RAALMPMGARAQVADNIDQLVAQVKASARPGDHLLCMSNGGFGGIHARLLEALKP CHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCC >Mature Secondary Structure MHIHILGICGTFMGGLAALAREAGHKVTGCDTGVYPPMSDQLRGLGIELIEGYSADQLAF CEEEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCHHEECCCCCCCEEC GPDVFVIGNVVSRARGPDGSPKYPLMEAILNSGRPYTSGPQWLSGHVLHHPTHHATGPRH CCCEEEECHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCE VLAVAGTHGKTTTTAMLTWILEQAGLQPGFLVGGVPLNFGVSARLGEGNTFVIEADEYDT EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCEEEEECCCCCC AFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVPSQGRIVVNAGEE HHHHCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH SLRRVLAQGCWSEQVLFGNSPLNQSGFTAQGEPNDFKVLKAGQAVAHVQWGISGVHNQLN HHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHHCHHHHHHHHH ALAAIAAAEHVGVPPEVAARALAEFQNVKRRMEVRGVVHAHGGDITVYDDFAHHPTAIHT HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCCCHHH TVDGLRRQLKGAGKDGDRILAIFEPRSNTMKLGSMTAQLPWSLEQADLAFCHAGGLDWDA HHHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCEEECCCCCCCHHCEEEEECCCCCCCC RAALMPMGARAQVADNIDQLVAQVKASARPGDHLLCMSNGGFGGIHARLLEALKP CHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]