| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786946
Identifier: 91786946
GI number: 91786946
Start: 1073749
End: 1074717
Strand: Reverse
Name: 91786946
Synonym: Bpro_1047
Alternate gene names: NA
Gene position: 1074717-1073749 (Counterclockwise)
Preceding gene: 91786948
Following gene: 91786945
Centisome position: 20.67
GC content: 63.47
Gene sequence:
>969_bases ATGGGTAAGACAACCGTCAAGAAATTGGCTTCGCTGCTGGCGGCAGGCGCTTGCGCGGCCGGCATGGCCTCAGCCGCCGG GGCACAGGAAACCAAGCTGACGCTGGGCATGTCTGGCTGGACCGGCTTCGCCCCGCTGTCGCTGGCGGACAAGGCCGGCA TCTTCAAGAAAAACGGCCTGGATGTGGAGATCAAGTTCATTCCGCAGAAAGACCGCCACCTGGCGCTGGCCGCCGGGGCC ATCCAGTGCGCAGCCACCACCGTGGAAACCCATGTGGCCTGGAACGCCAATGGCGTGCCCATCGTGCAGATCTTCCAGAT GGACAAATCCTATGGTGCCGACGGCCTGGCCGTGCGTAACGACATCAAGAGCTTTGCCGACCTGAAGGGCAAGACCATCG GCGTGGACGCCCCGGGCACCGCGCCCTACTTCGGCCTGGCGTGGATGCTGAACAAAAACGGCATGACGCTCAAGGACGTG AAGACCACCACCCTCTCGCCGCAGGCGTCTGCCCAGGCCTTTGTCGCGGGCCAGAACGACGCGGCCATGACCTACGAGCC CTACCTCTCCACCGTGCGCGACAACCCGGCCTCCGGCAAGATCCTGGCCACCACGCTGGACTACCCCATGGTGATGGACA CGGTCGGCTGCGCGCCGACCTGGCTCAAGGCCAATCCCAAGGCTGCCCAGGCGCTCACCAACTCCTACTTCGAGGCGCTG GCCATGATCAAGGCCGACCCCGTCAAGTCCAATGAATTGATGGGCTCGGCCGTCAAGCAGACCGGCGAGCAGTTTGCCAA GTCGGCAGCCTACCTGCGCTGGCAGGACAAGGCGGCCAACCAGAAGTTCTTCGCCGGCGAGATCACCGCGTTCATGAAAG ACGCCGAAAAGATCCTGCTGGAGTCCGGCGTGATCCGCAAGGCGCCCGAGAACCTCGCGGCAACGTTTGACACCAGCTTC ATCAAGTAA
Upstream 100 bases:
>100_bases TATACAGGTTGCTCCATGTTGGCAAAATTTCCCTGCCCGGACTTTGCTGTGCAGGGATCTTGGGATCAACCGATTTTTCT GAATCAAACAGGAGTACGCA
Downstream 100 bases:
>100_bases CGCCATGGAACACGTCATGGAACATATCCAGGCACCGCCTCACCTGCCCGAAGCACCGGTGCGCCAGCGCAGCCAGTGGC TGGCGCCGCTGGAGCCTGTG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; NMT1/THI5 Like Domain Protein; NlpA Lipoprotein; Amino Acid ABC Transporter; Nitrate/Sulfonate/Bicarbonate ABC Transporter; NMT1/THI5 Like Family; NLPA Lipoprotein
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MGKTTVKKLASLLAAGACAAGMASAAGAQETKLTLGMSGWTGFAPLSLADKAGIFKKNGLDVEIKFIPQKDRHLALAAGA IQCAATTVETHVAWNANGVPIVQIFQMDKSYGADGLAVRNDIKSFADLKGKTIGVDAPGTAPYFGLAWMLNKNGMTLKDV KTTTLSPQASAQAFVAGQNDAAMTYEPYLSTVRDNPASGKILATTLDYPMVMDTVGCAPTWLKANPKAAQALTNSYFEAL AMIKADPVKSNELMGSAVKQTGEQFAKSAAYLRWQDKAANQKFFAGEITAFMKDAEKILLESGVIRKAPENLAATFDTSF IK
Sequences:
>Translated_322_residues MGKTTVKKLASLLAAGACAAGMASAAGAQETKLTLGMSGWTGFAPLSLADKAGIFKKNGLDVEIKFIPQKDRHLALAAGA IQCAATTVETHVAWNANGVPIVQIFQMDKSYGADGLAVRNDIKSFADLKGKTIGVDAPGTAPYFGLAWMLNKNGMTLKDV KTTTLSPQASAQAFVAGQNDAAMTYEPYLSTVRDNPASGKILATTLDYPMVMDTVGCAPTWLKANPKAAQALTNSYFEAL AMIKADPVKSNELMGSAVKQTGEQFAKSAAYLRWQDKAANQKFFAGEITAFMKDAEKILLESGVIRKAPENLAATFDTSF IK >Mature_321_residues GKTTVKKLASLLAAGACAAGMASAAGAQETKLTLGMSGWTGFAPLSLADKAGIFKKNGLDVEIKFIPQKDRHLALAAGAI QCAATTVETHVAWNANGVPIVQIFQMDKSYGADGLAVRNDIKSFADLKGKTIGVDAPGTAPYFGLAWMLNKNGMTLKDVK TTTLSPQASAQAFVAGQNDAAMTYEPYLSTVRDNPASGKILATTLDYPMVMDTVGCAPTWLKANPKAAQALTNSYFEALA MIKADPVKSNELMGSAVKQTGEQFAKSAAYLRWQDKAANQKFFAGEITAFMKDAEKILLESGVIRKAPENLAATFDTSFI K
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34078; Mature: 33947
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKTTVKKLASLLAAGACAAGMASAAGAQETKLTLGMSGWTGFAPLSLADKAGIFKKNGL CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHCCCEECCCC DVEIKFIPQKDRHLALAAGAIQCAATTVETHVAWNANGVPIVQIFQMDKSYGADGLAVRN EEEEEEECCCCCEEEEEHHHHHHHHEEEEEEEEECCCCCCEEEEEEECHHCCCCCHHHHH DIKSFADLKGKTIGVDAPGTAPYFGLAWMLNKNGMTLKDVKTTTLSPQASAQAFVAGQND HHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCEEEECEEEECCCCCCCEEEEECCCC AAMTYEPYLSTVRDNPASGKILATTLDYPMVMDTVGCAPTWLKANPKAAQALTNSYFEAL CEEEEHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCCEECCCCHHHHHHHHHHHHHH AMIKADPVKSNELMGSAVKQTGEQFAKSAAYLRWQDKAANQKFFAGEITAFMKDAEKILL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHH ESGVIRKAPENLAATFDTSFIK HCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure GKTTVKKLASLLAAGACAAGMASAAGAQETKLTLGMSGWTGFAPLSLADKAGIFKKNGL CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHCCCEECCCC DVEIKFIPQKDRHLALAAGAIQCAATTVETHVAWNANGVPIVQIFQMDKSYGADGLAVRN EEEEEEECCCCCEEEEEHHHHHHHHEEEEEEEEECCCCCCEEEEEEECHHCCCCCHHHHH DIKSFADLKGKTIGVDAPGTAPYFGLAWMLNKNGMTLKDVKTTTLSPQASAQAFVAGQND HHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCEEEECEEEECCCCCCCEEEEECCCC AAMTYEPYLSTVRDNPASGKILATTLDYPMVMDTVGCAPTWLKANPKAAQALTNSYFEAL CEEEEHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCCEECCCCHHHHHHHHHHHHHH AMIKADPVKSNELMGSAVKQTGEQFAKSAAYLRWQDKAANQKFFAGEITAFMKDAEKILL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHH ESGVIRKAPENLAATFDTSFIK HCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA