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The map label for this gene is ydcV [H]

Identifier: 91786908

GI number: 91786908

Start: 1023250

End: 1024134

Strand: Reverse

Name: ydcV [H]

Synonym: Bpro_1008

Alternate gene names: 91786908

Gene position: 1024134-1023250 (Counterclockwise)

Preceding gene: 91786909

Following gene: 91786907

Centisome position: 19.69

GC content: 63.95

Gene sequence:

>885_bases
ATGAACAGCGACAAACGCACCGCCGGCTTCTGGTTCCTGGCCGCTTTTTTCGCCCTGTTCGTGCTGTTCCTCTACGGGCC
CATGTTCGTCATCGTGGTGCTGAGCTTTCAGGGCCCCGAAGGCGGGCTCACCTTTCCGCTGCGCGGCGTGTCGCTGCACT
GGTTTTACAAGCTGGCCGAGGGGCTGGGCGTGGTGGACATCGGCACGGCACTCAGGCGCTCGTTGGGCCTGGGCCTGGCG
GTGATGGCTTTTACCGTCGTGCTGTCGGTGCTGGCCGGCCTGGCTTTCCGCAAGAAGCTCGCGGGCGCCAACACGCTGTT
TTTTGTGGTGGTGGCGAGCCTGATCATGCCGTCCATCATTGTGTCGCTGGGCATTGGCCTGGAGTTCCGGCTGCTCGACA
CCGGCATCAAGAAGGTGCTTGAAGTTTTCGGCATGACCGGCACGCTGGAAGGCTACGGCACCGCACTCGGGCTGTTCACG
TCGGCGCTTGGCGCGCACCTGACCTGGACGCTGCCCTTTGGCCTCCTGATCATGTTTGCCGTTTTCAACCGCTTCAACCC
CGCCTATGAAGAAGCCGCGCGCGACCTGGGCGCCACGCCGTGGCAGGGCTTTCGCCATGTGGTGCTGCCGCTGATTGCGC
CGTCGGTGGTGGGCATAGGCATGTTTGGCTTTACCCTGAGCTGGGATGAAATCGCCCGCACCTCGCAGGCCATTGGTGAT
GTGAACACCCTGCCGCTGGAACTGCAGGGCCTGACCACCACCGTCACCACGCCGTCCATCTACGCGCTGGGCACCGTCAC
CACCGTGGTGTCGCTGCTCGTCATGGCGTTGGCCCTGGGCCTGGCCTGGTGGCTGGACCGGCGGCAAAAGAAAGGCACCC
GATGA

Upstream 100 bases:

>100_bases
GTTCCCGCTGGCCGCGGCCAATGCGGTCATCCTGCTGGCGTTGGTGCTCATGATCATCTGGGCACTGACCCGCATGGTCG
ACATCCGCAAGGAACTCTGA

Downstream 100 bases:

>100_bases
GCCAGGCAACGCCCACAACGCCATTGACCGACAGCGAGATGTATGAACGCGTGATCTCGGCCATTCTCGACCACCGCCTG
CCGCCGGGCACCAAGCTGGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNSDKRTAGFWFLAAFFALFVLFLYGPMFVIVVLSFQGPEGGLTFPLRGVSLHWFYKLAEGLGVVDIGTALRRSLGLGLA
VMAFTVVLSVLAGLAFRKKLAGANTLFFVVVASLIMPSIIVSLGIGLEFRLLDTGIKKVLEVFGMTGTLEGYGTALGLFT
SALGAHLTWTLPFGLLIMFAVFNRFNPAYEEAARDLGATPWQGFRHVVLPLIAPSVVGIGMFGFTLSWDEIARTSQAIGD
VNTLPLELQGLTTTVTTPSIYALGTVTTVVSLLVMALALGLAWWLDRRQKKGTR

Sequences:

>Translated_294_residues
MNSDKRTAGFWFLAAFFALFVLFLYGPMFVIVVLSFQGPEGGLTFPLRGVSLHWFYKLAEGLGVVDIGTALRRSLGLGLA
VMAFTVVLSVLAGLAFRKKLAGANTLFFVVVASLIMPSIIVSLGIGLEFRLLDTGIKKVLEVFGMTGTLEGYGTALGLFT
SALGAHLTWTLPFGLLIMFAVFNRFNPAYEEAARDLGATPWQGFRHVVLPLIAPSVVGIGMFGFTLSWDEIARTSQAIGD
VNTLPLELQGLTTTVTTPSIYALGTVTTVVSLLVMALALGLAWWLDRRQKKGTR
>Mature_294_residues
MNSDKRTAGFWFLAAFFALFVLFLYGPMFVIVVLSFQGPEGGLTFPLRGVSLHWFYKLAEGLGVVDIGTALRRSLGLGLA
VMAFTVVLSVLAGLAFRKKLAGANTLFFVVVASLIMPSIIVSLGIGLEFRLLDTGIKKVLEVFGMTGTLEGYGTALGLFT
SALGAHLTWTLPFGLLIMFAVFNRFNPAYEEAARDLGATPWQGFRHVVLPLIAPSVVGIGMFGFTLSWDEIARTSQAIGD
VNTLPLELQGLTTTVTTPSIYALGTVTTVVSLLVMALALGLAWWLDRRQKKGTR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=275, Percent_Identity=29.8181818181818, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787368, Length=266, Percent_Identity=27.4436090225564, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787081, Length=272, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31732; Mature: 31732

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDKRTAGFWFLAAFFALFVLFLYGPMFVIVVLSFQGPEGGLTFPLRGVSLHWFYKLAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
GLGVVDIGTALRRSLGLGLAVMAFTVVLSVLAGLAFRKKLAGANTLFFVVVASLIMPSII
CCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VSLGIGLEFRLLDTGIKKVLEVFGMTGTLEGYGTALGLFTSALGAHLTWTLPFGLLIMFA
HHHCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHH
VFNRFNPAYEEAARDLGATPWQGFRHVVLPLIAPSVVGIGMFGFTLSWDEIARTSQAIGD
HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
VNTLPLELQGLTTTVTTPSIYALGTVTTVVSLLVMALALGLAWWLDRRQKKGTR
CCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSDKRTAGFWFLAAFFALFVLFLYGPMFVIVVLSFQGPEGGLTFPLRGVSLHWFYKLAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
GLGVVDIGTALRRSLGLGLAVMAFTVVLSVLAGLAFRKKLAGANTLFFVVVASLIMPSII
CCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VSLGIGLEFRLLDTGIKKVLEVFGMTGTLEGYGTALGLFTSALGAHLTWTLPFGLLIMFA
HHHCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHH
VFNRFNPAYEEAARDLGATPWQGFRHVVLPLIAPSVVGIGMFGFTLSWDEIARTSQAIGD
HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
VNTLPLELQGLTTTVTTPSIYALGTVTTVVSLLVMALALGLAWWLDRRQKKGTR
CCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]