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The map label for this gene is ydhC [H]

Identifier: 91786907

GI number: 91786907

Start: 1022549

End: 1023253

Strand: Reverse

Name: ydhC [H]

Synonym: Bpro_1007

Alternate gene names: 91786907

Gene position: 1023253-1022549 (Counterclockwise)

Preceding gene: 91786908

Following gene: 91786906

Centisome position: 19.68

GC content: 67.94

Gene sequence:

>705_bases
ATGAGCCAGGCAACGCCCACAACGCCATTGACCGACAGCGAGATGTATGAACGCGTGATCTCGGCCATTCTCGACCACCG
CCTGCCGCCGGGCACCAAGCTGGTGGAAGACAAACTGGCCAGCGCATTCGGCGTGTCGCGCACGCGCATCCGCCCGGTGC
TGGTGCGGCTGGCCAATGAGCAGGTGGTCACCCTCATACCCAATCGCGGCGCCACCGTCGCCCAGCCCACCGAGCAGGAA
GCGCGCGAGGTCTTCGAAGTGCGCCGGCTGATCGAGCCCACGCTGGTGGAGCTGTTCATCGCCAACGCCAGCGAGGCCGA
CATGCAGCAGCTCAAGCGCTGCATCGACGACGAGGAAGCCGCGCGCCTGGCCGGCGACATGCACCGCGCAATCCGGCTGT
CGGGTGACTTCCACCTGCAGATCGCCGAGCGCGCCGGCCACCAGACGCTGGGCCGCATCCTGCGCGAGCTCACGTCGCGC
ACCTCGCTCATTCTGATGACCTACAGCACGGCCCATGAACGCAGCCGCGATGAAGCCGCCGCCTGCGGCTGCCGCGAACA
CCGCACGCTGCTTGACGCCATCCGCCTGCGCGACGCCCGGGAAGCCGCGCGCCACATGCGCGAGCACCTGACGCGGCTGG
AGTCCCAGCTGCAATTTACGCCACCTGCGGACGACGCACCCGACCTGTCCACGCTGTTTGGTTGA

Upstream 100 bases:

>100_bases
ACGCGCTGGGCACCGTCACCACCGTGGTGTCGCTGCTCGTCATGGCGTTGGCCCTGGGCCTGGCCTGGTGGCTGGACCGG
CGGCAAAAGAAAGGCACCCG

Downstream 100 bases:

>100_bases
TATGGCCCCCACGCTTGTCGCTTTGCGTACTACGCTGCCCCCGAGGGGGCCGCCCGCCTGCGGCCCGGCAAAGCCGGTTC
CGCGGCTCATGCTTGCATGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSQATPTTPLTDSEMYERVISAILDHRLPPGTKLVEDKLASAFGVSRTRIRPVLVRLANEQVVTLIPNRGATVAQPTEQE
AREVFEVRRLIEPTLVELFIANASEADMQQLKRCIDDEEAARLAGDMHRAIRLSGDFHLQIAERAGHQTLGRILRELTSR
TSLILMTYSTAHERSRDEAAACGCREHRTLLDAIRLRDAREAARHMREHLTRLESQLQFTPPADDAPDLSTLFG

Sequences:

>Translated_234_residues
MSQATPTTPLTDSEMYERVISAILDHRLPPGTKLVEDKLASAFGVSRTRIRPVLVRLANEQVVTLIPNRGATVAQPTEQE
AREVFEVRRLIEPTLVELFIANASEADMQQLKRCIDDEEAARLAGDMHRAIRLSGDFHLQIAERAGHQTLGRILRELTSR
TSLILMTYSTAHERSRDEAAACGCREHRTLLDAIRLRDAREAARHMREHLTRLESQLQFTPPADDAPDLSTLFG
>Mature_233_residues
SQATPTTPLTDSEMYERVISAILDHRLPPGTKLVEDKLASAFGVSRTRIRPVLVRLANEQVVTLIPNRGATVAQPTEQEA
REVFEVRRLIEPTLVELFIANASEADMQQLKRCIDDEEAARLAGDMHRAIRLSGDFHLQIAERAGHQTLGRILRELTSRT
SLILMTYSTAHERSRDEAAACGCREHRTLLDAIRLRDAREAARHMREHLTRLESQLQFTPPADDAPDLSTLFG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26296; Mature: 26165

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQATPTTPLTDSEMYERVISAILDHRLPPGTKLVEDKLASAFGVSRTRIRPVLVRLANE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
QVVTLIPNRGATVAQPTEQEAREVFEVRRLIEPTLVELFIANASEADMQQLKRCIDDEEA
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHH
ARLAGDMHRAIRLSGDFHLQIAERAGHQTLGRILRELTSRTSLILMTYSTAHERSRDEAA
HHHHHHHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHCHHHHH
ACGCREHRTLLDAIRLRDAREAARHMREHLTRLESQLQFTPPADDAPDLSTLFG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
SQATPTTPLTDSEMYERVISAILDHRLPPGTKLVEDKLASAFGVSRTRIRPVLVRLANE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
QVVTLIPNRGATVAQPTEQEAREVFEVRRLIEPTLVELFIANASEADMQQLKRCIDDEEA
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHH
ARLAGDMHRAIRLSGDFHLQIAERAGHQTLGRILRELTSRTSLILMTYSTAHERSRDEAA
HHHHHHHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHCHHHHH
ACGCREHRTLLDAIRLRDAREAARHMREHLTRLESQLQFTPPADDAPDLSTLFG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]