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The map label for this gene is ykfC [H]

Identifier: 91786851

GI number: 91786851

Start: 970565

End: 972274

Strand: Reverse

Name: ykfC [H]

Synonym: Bpro_0949

Alternate gene names: 91786851

Gene position: 972274-970565 (Counterclockwise)

Preceding gene: 91786856

Following gene: 91786850

Centisome position: 18.7

GC content: 53.22

Gene sequence:

>1710_bases
ATGGAACACATCGGCAACGATGCTGCGTCTCCGGGCGAATCAAGTGAATGGCACTCCATTGATTGGAAGGCCGTCATGCA
GTTCGTCGGAAAGGCGCAGATGCGCATAGCGCAGGCAGAAACGGAGAAGGATTTCCGAAGGGTCGCAAGACTCAGAAGGA
GTCTGATCCGATCCTGGCAAGCCAAGGCATTGGCAGTCAGGCGAGTAACGGAAAACCAAGGGAAGCGAACGAGTGGCGTC
GATTGCGTACTTTGGGACACGCCAACAAAGAAATGGAATGCGATAGGTTGTCTGAACCCCAAAGGGTATCGGGCTCGCCC
CCTAAGGCGGGCCTATATCCCGAAGGCCGACGGAAAGCAACGCCCTCTGGGCATGCCGACTATGAAGGACCGAGCGATGC
AAGCACTTTATCTGCTTGCGCTGGAACCGGCTGTGGAATGTGCGTCCGATCCGAACTCGTATGGGTTTCGGAAAGGCCGA
TCAACACATGATGCACGGTCTCAGTTGTTTGTATCTTTATCCAGAAAGGTGTCAGCCACATGGGTACTCGATGCGGACAT
CTCAGGGTTCTTTGACAACATCAACCACGAGTGGTTGCTGAACAATGTCCACATGGACAAAGTGATGCTGCGCAAGTGGT
TGAAATCTGGAGTTGTTGACGCGGGTCAGCTCCAGCGCACGGATGACGGTACGCCGCAAGGCGGCGTCATTTCGCCGACG
TTAGCGAACATCACCCTCAATGGGCTGGAACCGGGGCTTACGCAATTCCTGCGGGAAAAGCTGGGAACCACACTGGCAAA
GAAAGGGAAGGTGAACGTGGTTCGGTATGCCGATGACTTTGTGGTAACAGGGGACTCGAAAGAGTTACTTGAAAACACAG
TCCAACCATGGATAGTTGAATTCCTGCGCGAGCGGGGACTGACGCTGTCCGCGGAGAAGACGCGCATTGTGCATATTGAC
CAGGGTTTTGATTTTCTGGGATGGAGCTTCCGCAAATACGGGGGCAAGCTACTCATCAAACCGAGTCAGAAAAACGTGAA
AGCGTTTTATGGCAAGGTCAAGAAAATCATCGCCAAATCGGACTCGAAACTTCCAACCGAAACGCTGATAAAGCGCCTGA
ATCCAGTCCTCAAAGGCTGGGCTCAGTACCACAAGGGCACGGTTGCAAAGCAGACTTTCAGCAAAGTAGATCACCTGATT
TATTGGAGATTAACGCGCTGGGGTTTACGCACGCATCCCCGCAAATCCGGGAAGTGGGTGTATGCCCATTACTGGAAGCA
GTGTGGTTCACGCCGCCTGTTTGCGGGGTTGCAAGATGACCCATCTGGGGGTGACGAAAGAATACCGCTTCCGCTGTATT
CCTTGGCGGACATGAAAATTGTTCGCCACGTCAAAGTGAAGGGGGATTACAACCCTTTCCACCCCGACTGGGTTACCTAC
GGGGAAAAACTGCGAGTGCAACGAATGGGTGAAACCATTTGGAGCGCTCAAAGGGCCTCTCTGTGGTTCGACCAAGGTGG
TAAGTGCGCTCTCTGTGAGCAAGAAATAGACATAGCTGATGAAAACATGGACGACCACCATATCGTCTATCGGCAGCTAG
GAGGGAGTGATGCTCTTTCCAATCGGGTGCTGTTACACCCGATCTGTCACAGGCGTGTCCACGCCCTAGGTTTGAAGGTT
ATCAAGCCGGTCCCAGCACGGGGACTTTAA

Upstream 100 bases:

>100_bases
GACAGCGTAAAGCCGTTGCGACTTTAACTATGACCCAGAGGGTATCTGACCCTCTGGGTCAGTGCCGTCTTCAATGGGTC
AAACCACACTGGAGAATGGT

Downstream 100 bases:

>100_bases
TCTGGTGAATTGATGGAGGGCTATGCAGCCCGATGAAGTCAGCTAACCAGGGGTCGTGTCTGAGCCGTGTGCGGTGAAAG
TCGCAAGCACGGTTCGTCGG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MEHIGNDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAETEKDFRRVARLRRSLIRSWQAKALAVRRVTENQGKRTSGV
DCVLWDTPTKKWNAIGCLNPKGYRARPLRRAYIPKADGKQRPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVSLSRKVSATWVLDADISGFFDNINHEWLLNNVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPT
LANITLNGLEPGLTQFLREKLGTTLAKKGKVNVVRYADDFVVTGDSKELLENTVQPWIVEFLRERGLTLSAEKTRIVHID
QGFDFLGWSFRKYGGKLLIKPSQKNVKAFYGKVKKIIAKSDSKLPTETLIKRLNPVLKGWAQYHKGTVAKQTFSKVDHLI
YWRLTRWGLRTHPRKSGKWVYAHYWKQCGSRRLFAGLQDDPSGGDERIPLPLYSLADMKIVRHVKVKGDYNPFHPDWVTY
GEKLRVQRMGETIWSAQRASLWFDQGGKCALCEQEIDIADENMDDHHIVYRQLGGSDALSNRVLLHPICHRRVHALGLKV
IKPVPARGL

Sequences:

>Translated_569_residues
MEHIGNDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAETEKDFRRVARLRRSLIRSWQAKALAVRRVTENQGKRTSGV
DCVLWDTPTKKWNAIGCLNPKGYRARPLRRAYIPKADGKQRPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVSLSRKVSATWVLDADISGFFDNINHEWLLNNVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPT
LANITLNGLEPGLTQFLREKLGTTLAKKGKVNVVRYADDFVVTGDSKELLENTVQPWIVEFLRERGLTLSAEKTRIVHID
QGFDFLGWSFRKYGGKLLIKPSQKNVKAFYGKVKKIIAKSDSKLPTETLIKRLNPVLKGWAQYHKGTVAKQTFSKVDHLI
YWRLTRWGLRTHPRKSGKWVYAHYWKQCGSRRLFAGLQDDPSGGDERIPLPLYSLADMKIVRHVKVKGDYNPFHPDWVTY
GEKLRVQRMGETIWSAQRASLWFDQGGKCALCEQEIDIADENMDDHHIVYRQLGGSDALSNRVLLHPICHRRVHALGLKV
IKPVPARGL
>Mature_569_residues
MEHIGNDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAETEKDFRRVARLRRSLIRSWQAKALAVRRVTENQGKRTSGV
DCVLWDTPTKKWNAIGCLNPKGYRARPLRRAYIPKADGKQRPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGR
STHDARSQLFVSLSRKVSATWVLDADISGFFDNINHEWLLNNVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPT
LANITLNGLEPGLTQFLREKLGTTLAKKGKVNVVRYADDFVVTGDSKELLENTVQPWIVEFLRERGLTLSAEKTRIVHID
QGFDFLGWSFRKYGGKLLIKPSQKNVKAFYGKVKKIIAKSDSKLPTETLIKRLNPVLKGWAQYHKGTVAKQTFSKVDHLI
YWRLTRWGLRTHPRKSGKWVYAHYWKQCGSRRLFAGLQDDPSGGDERIPLPLYSLADMKIVRHVKVKGDYNPFHPDWVTY
GEKLRVQRMGETIWSAQRASLWFDQGGKCALCEQEIDIADENMDDHHIVYRQLGGSDALSNRVLLHPICHRRVHALGLKV
IKPVPARGL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=328, Percent_Identity=24.0853658536585, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6226520, Length=327, Percent_Identity=23.5474006116208, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 64666; Mature: 64666

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHIGNDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAETEKDFRRVARLRRSLIRSWQ
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKALAVRRVTENQGKRTSGVDCVLWDTPTKKWNAIGCLNPKGYRARPLRRAYIPKADGKQ
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCC
RPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGRSTHDARSQLFVSLSRKVSAT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
WVLDADISGFFDNINHEWLLNNVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPT
EEEECCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCE
LANITLNGLEPGLTQFLREKLGTTLAKKGKVNVVRYADDFVVTGDSKELLENTVQPWIVE
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCHHHHHHCCCHHHHH
FLRERGLTLSAEKTRIVHIDQGFDFLGWSFRKYGGKLLIKPSQKNVKAFYGKVKKIIAKS
HHHHCCCEEEECCEEEEEEECCCCHHCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
DSKLPTETLIKRLNPVLKGWAQYHKGTVAKQTFSKVDHLIYWRLTRWGLRTHPRKSGKWV
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
YAHYWKQCGSRRLFAGLQDDPSGGDERIPLPLYSLADMKIVRHVKVKGDYNPFHPDWVTY
HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHEEHEEEEECCCCCCCCHHHHH
GEKLRVQRMGETIWSAQRASLWFDQGGKCALCEQEIDIADENMDDHHIVYRQLGGSDALS
HHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHC
NRVLLHPICHRRVHALGLKVIKPVPARGL
CCEEEHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEHIGNDAASPGESSEWHSIDWKAVMQFVGKAQMRIAQAETEKDFRRVARLRRSLIRSWQ
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKALAVRRVTENQGKRTSGVDCVLWDTPTKKWNAIGCLNPKGYRARPLRRAYIPKADGKQ
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCC
RPLGMPTMKDRAMQALYLLALEPAVECASDPNSYGFRKGRSTHDARSQLFVSLSRKVSAT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
WVLDADISGFFDNINHEWLLNNVHMDKVMLRKWLKSGVVDAGQLQRTDDGTPQGGVISPT
EEEECCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCE
LANITLNGLEPGLTQFLREKLGTTLAKKGKVNVVRYADDFVVTGDSKELLENTVQPWIVE
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCHHHHHHCCCHHHHH
FLRERGLTLSAEKTRIVHIDQGFDFLGWSFRKYGGKLLIKPSQKNVKAFYGKVKKIIAKS
HHHHCCCEEEECCEEEEEEECCCCHHCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
DSKLPTETLIKRLNPVLKGWAQYHKGTVAKQTFSKVDHLIYWRLTRWGLRTHPRKSGKWV
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
YAHYWKQCGSRRLFAGLQDDPSGGDERIPLPLYSLADMKIVRHVKVKGDYNPFHPDWVTY
HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHEEHEEEEECCCCCCCCHHHHH
GEKLRVQRMGETIWSAQRASLWFDQGGKCALCEQEIDIADENMDDHHIVYRQLGGSDALS
HHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHC
NRVLLHPICHRRVHALGLKVIKPVPARGL
CCEEEHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]