| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is obgE [H]
Identifier: 91786739
GI number: 91786739
Start: 860125
End: 861210
Strand: Reverse
Name: obgE [H]
Synonym: Bpro_0837
Alternate gene names: 91786739
Gene position: 861210-860125 (Counterclockwise)
Preceding gene: 91786740
Following gene: 91786738
Centisome position: 16.56
GC content: 62.52
Gene sequence:
>1086_bases ATGAAATTTGTTGACGAAGCCTTTATTGACATTGCCGCCGGCGATGGCGGGAGTGGCTGCGTCTCGTTCAGCCACGAAAA GTACAAAGAGTTCGGCGGCCCGAACGGCGGCGACGGCGGGCGCGGCGGCCATGTGTACGCGGTGGCGGATGTCAACCTCA ACACGCTGGTGGATTTCCGCTTTTCGCGGCGCCACGAGGCCCGCAACGGCCAGCACGGCATGGGCTCGGACATGTTCGGC GCCAAAGGCGATGACATCATCCTGAAGATGCCGGTGGGCACCATCCTGACCGACGCCGAGACCGGCGAGGTCCTTTTTGA GCTGCTGGTGCCGGGCGAGCAGGTCCTGATCGCCAAGGGCGGAGACGGCGGTTTCGGCAACCTGCGCTTCAAAAGCTCGA CCAACCGCGCGCCCCGCAGCAAAACGCCTGGCTGGCCCGGCGAGCGAAAAAACCTCAAACTGGAGCTCAAGGTACTGGCC GACGTGGGCCTGCTCGGCATGCCCAATGCCGGAAAATCCACCTTTATTTCGGCAGTCTCCAACGCCCGCCCCCGCATCGC CGACTACCCTTTCACCACGCTTCACCCCAACCTGGGCGTGGTGCGGGTGGGACCCGAGCAAAGCTTTGTGGTGGCCGACC TGCCCGGCCTGATTGAAGGTGCCTCCGAAGGTGCTGGCCTGGGACATCTCTTCCTTCGGCACCTGCAGCGCACCCGGCTG CTGCTGCACATCGTGGACCTGGCGCCTTTTGACGAAGGCGTGGACCCGGTGGCGCAGGCCAAAGCCATCGTGCGCGAGCT CAAGAAATACGACGAAGCGCTCTACGAAAAGCCGCGCTGGCTGGTGCTGAACAAGCTCGACATGGTGGACGCAGACAAGC GCGCAGCCATCGTCAAGGATTTCGTCAAACGCTTCAAGTTCAAGGGCCCTGTGTTCGAGATTTCGGCACTCACGCGCGAA GGCTGCGAACACCTGATCAAGACGATCTACCAGCACGTCAAGCAGGTCCAGAAAAGCGAGCAACCCGTGGAAGAAGTCGA CCCGCGCTTTGTCCCGCTGCCTCCGGAATCGCCTGAGACGCCCTGA
Upstream 100 bases:
>100_bases TCACTTCGACTGAAACGAAGCCCCGACTTGTCGGGGCTTTTTTGTTTGTAAACTTGATCTCCGGCCTCTAACGTACCTGT TTTAACCGCAGCATTCCATC
Downstream 100 bases:
>100_bases CCCTTCGTTTTTTTTTGCCAAATCCGCAGCAAGTGCGGAAGTGGCGATTGCTACATATATGATAGCTTCTTACCCTCGTA TTCATTGGACTAGAGCCTGA
Product: GTPase ObgE
Products: NA
Alternate protein names: GTP-binding protein obg [H]
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MKFVDEAFIDIAAGDGGSGCVSFSHEKYKEFGGPNGGDGGRGGHVYAVADVNLNTLVDFRFSRRHEARNGQHGMGSDMFG AKGDDIILKMPVGTILTDAETGEVLFELLVPGEQVLIAKGGDGGFGNLRFKSSTNRAPRSKTPGWPGERKNLKLELKVLA DVGLLGMPNAGKSTFISAVSNARPRIADYPFTTLHPNLGVVRVGPEQSFVVADLPGLIEGASEGAGLGHLFLRHLQRTRL LLHIVDLAPFDEGVDPVAQAKAIVRELKKYDEALYEKPRWLVLNKLDMVDADKRAAIVKDFVKRFKFKGPVFEISALTRE GCEHLIKTIYQHVKQVQKSEQPVEEVDPRFVPLPPESPETP
Sequences:
>Translated_361_residues MKFVDEAFIDIAAGDGGSGCVSFSHEKYKEFGGPNGGDGGRGGHVYAVADVNLNTLVDFRFSRRHEARNGQHGMGSDMFG AKGDDIILKMPVGTILTDAETGEVLFELLVPGEQVLIAKGGDGGFGNLRFKSSTNRAPRSKTPGWPGERKNLKLELKVLA DVGLLGMPNAGKSTFISAVSNARPRIADYPFTTLHPNLGVVRVGPEQSFVVADLPGLIEGASEGAGLGHLFLRHLQRTRL LLHIVDLAPFDEGVDPVAQAKAIVRELKKYDEALYEKPRWLVLNKLDMVDADKRAAIVKDFVKRFKFKGPVFEISALTRE GCEHLIKTIYQHVKQVQKSEQPVEEVDPRFVPLPPESPETP >Mature_361_residues MKFVDEAFIDIAAGDGGSGCVSFSHEKYKEFGGPNGGDGGRGGHVYAVADVNLNTLVDFRFSRRHEARNGQHGMGSDMFG AKGDDIILKMPVGTILTDAETGEVLFELLVPGEQVLIAKGGDGGFGNLRFKSSTNRAPRSKTPGWPGERKNLKLELKVLA DVGLLGMPNAGKSTFISAVSNARPRIADYPFTTLHPNLGVVRVGPEQSFVVADLPGLIEGASEGAGLGHLFLRHLQRTRL LLHIVDLAPFDEGVDPVAQAKAIVRELKKYDEALYEKPRWLVLNKLDMVDADKRAAIVKDFVKRFKFKGPVFEISALTRE GCEHLIKTIYQHVKQVQKSEQPVEEVDPRFVPLPPESPETP
Specific function: An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in t
COG id: COG0536
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI24308117, Length=331, Percent_Identity=40.1812688821752, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI111955139, Length=362, Percent_Identity=36.1878453038674, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI111955063, Length=195, Percent_Identity=39.4871794871795, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI58761500, Length=136, Percent_Identity=30.8823529411765, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI1789574, Length=347, Percent_Identity=53.314121037464, Blast_Score=327, Evalue=9e-91, Organism=Escherichia coli, GI1787454, Length=158, Percent_Identity=31.0126582278481, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17552324, Length=312, Percent_Identity=30.7692307692308, Blast_Score=142, Evalue=3e-34, Organism=Caenorhabditis elegans, GI17508313, Length=332, Percent_Identity=35.8433734939759, Blast_Score=140, Evalue=7e-34, Organism=Caenorhabditis elegans, GI17509631, Length=139, Percent_Identity=33.0935251798561, Blast_Score=74, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6321962, Length=174, Percent_Identity=39.0804597701149, Blast_Score=121, Evalue=2e-28, Organism=Drosophila melanogaster, GI24585318, Length=270, Percent_Identity=39.2592592592593, Blast_Score=164, Evalue=1e-40, Organism=Drosophila melanogaster, GI20129375, Length=342, Percent_Identity=34.7953216374269, Blast_Score=141, Evalue=6e-34, Organism=Drosophila melanogaster, GI24640873, Length=148, Percent_Identity=31.7567567567568, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640877, Length=148, Percent_Identity=31.7567567567568, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640875, Length=148, Percent_Identity=31.7567567567568, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014100 - InterPro: IPR006074 - InterPro: IPR006073 - InterPro: IPR006169 - InterPro: IPR002917 [H]
Pfam domain/function: PF01018 GTP1_OBG; PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 39419; Mature: 39419
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00905 GTP1_OBG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFVDEAFIDIAAGDGGSGCVSFSHEKYKEFGGPNGGDGGRGGHVYAVADVNLNTLVDFR CCCHHCCCEEEECCCCCCCEEECCHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHEEHH FSRRHEARNGQHGMGSDMFGAKGDDIILKMPVGTILTDAETGEVLFELLVPGEQVLIAKG HHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCHHHHHHHHHCCCCEEEEEEC GDGGFGNLRFKSSTNRAPRSKTPGWPGERKNLKLELKVLADVGLLGMPNAGKSTFISAVS CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH NARPRIADYPFTTLHPNLGVVRVGPEQSFVVADLPGLIEGASEGAGLGHLFLRHLQRTRL CCCCCCCCCCCEEECCCCCEEEECCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHH LLHIVDLAPFDEGVDPVAQAKAIVRELKKYDEALYEKPRWLVLNKLDMVDADKRAAIVKD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH FVKRFKFKGPVFEISALTREGCEHLIKTIYQHVKQVQKSEQPVEEVDPRFVPLPPESPET HHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEECCCCCCCC P C >Mature Secondary Structure MKFVDEAFIDIAAGDGGSGCVSFSHEKYKEFGGPNGGDGGRGGHVYAVADVNLNTLVDFR CCCHHCCCEEEECCCCCCCEEECCHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHEEHH FSRRHEARNGQHGMGSDMFGAKGDDIILKMPVGTILTDAETGEVLFELLVPGEQVLIAKG HHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCHHHHHHHHHCCCCEEEEEEC GDGGFGNLRFKSSTNRAPRSKTPGWPGERKNLKLELKVLADVGLLGMPNAGKSTFISAVS CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH NARPRIADYPFTTLHPNLGVVRVGPEQSFVVADLPGLIEGASEGAGLGHLFLRHLQRTRL CCCCCCCCCCCEEECCCCCEEEECCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHH LLHIVDLAPFDEGVDPVAQAKAIVRELKKYDEALYEKPRWLVLNKLDMVDADKRAAIVKD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH FVKRFKFKGPVFEISALTREGCEHLIKTIYQHVKQVQKSEQPVEEVDPRFVPLPPESPET HHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEECCCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA