| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yfhM [H]
Identifier: 91786672
GI number: 91786672
Start: 790773
End: 791750
Strand: Reverse
Name: yfhM [H]
Synonym: Bpro_0770
Alternate gene names: 91786672
Gene position: 791750-790773 (Counterclockwise)
Preceding gene: 91786673
Following gene: 91786669
Centisome position: 15.23
GC content: 66.05
Gene sequence:
>978_bases ATGATTGAAACAAATCTGCGGGAGCTGCCGCATGGCATCACCCTGTCATGCCGCAGTGCCGGCGAGAAGGGCCGGCCGGT GCTGATGTTCCTGCATGGCTTCCCGGAAGCCGCTTTTGTGTGGGATAGCCTGCTGACCCACTTTGCCCAACCCGGGAACG GCGGCTTTCGCTGTGTGGCGCCCAACTTGCGCGGCTTTGAGCACTCCAGCGCCCCCGCCGACGTGGCCGCCTACCGCCCG AAACACCTGGTGCAGGACATTGCGGCACTCATTGCACTGGAGTGCGGGGAAAGCGGTCTGCAGCACAGCCCAGGCGGTGA CAAGCCCGGGGGCCAGCTTGCCTGCCTGGTCGCCCACGACTGGGGCGGCGCCGTCGCCTGGAACCTGGCGGCGAGCCGGC CGCATTTGACGAGAAAGCTGGCCATCATCAATTCGCCGCATCCCGGCACCTTTTTACGTGAGCTGCAGCACTCTGCCGCC CAGCAGGCCGCCAGCGCCTACATGAATTTCCTGATCCGGCCGGATGCCGAGGCGCTGCTGGCTGAAGACGACTTCCGCCG GCTGTGGGAGTTCTTCAGCAACATGGGTGCGGTGGACGGGCCTCACGCCTGGCTGACGGAGACAGTGCGCGCCCAGTACC GCGAGGTATGGCGCCTGGGCCTGACCGGCCCCTGCAATTACTACCGGGCCTCACCCCTGCGCCCGCCCCGGTCCGGCCCG CCGCACCATGACCCCGCCGCTGCGGGCGTGACCCTTCCGCGCGAGATGCTCGAAGTCCACCTTCCCACCCTGGTGCTCTG GGGCACGGAAGACACCGCATTGCCGACCGCACTGCTGGACGGCTTGGGTGACTATGTACCGCAAATGGATCTGCGCCGCA TGGGAGGCGCCACGCACTGGATCGTGCATGAGCAGCCGGAACGGGTAGCCGCTCATCTGCAGCAATTCCTGCAGGTTTCT GCGCCGAATTGCTATTGA
Upstream 100 bases:
>100_bases CCCGCCGCCCTGACGGCCGGCCCGCAACGCTAAAGCTTCGAGCAAAAATGCTTGCGCCCGAGATATGACGGGAGCAAGCA GCTATTGAAAGCATAGCGCG
Downstream 100 bases:
>100_bases TTAGAGCTTAAAGCTCCGGTATTTCCTGGATCAGAGGCAAATTTCACCTAAAACCGCCAAGCCGCGGCCTAGTTTAATAC AGCGAAGGCGCGCCCTCGGG
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVAPNLRGFEHSSAPADVAAYRP KHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHDWGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAA QQAASAYMNFLIRPDAEALLAEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHWIVHEQPERVAAHLQQFLQVS APNCY
Sequences:
>Translated_325_residues MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVAPNLRGFEHSSAPADVAAYRP KHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHDWGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAA QQAASAYMNFLIRPDAEALLAEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHWIVHEQPERVAAHLQQFLQVS APNCY >Mature_325_residues MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVAPNLRGFEHSSAPADVAAYRP KHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHDWGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAA QQAASAYMNFLIRPDAEALLAEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHWIVHEQPERVAAHLQQFLQVS APNCY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI218777837, Length=312, Percent_Identity=28.8461538461538, Blast_Score=125, Evalue=5e-29, Organism=Homo sapiens, GI218777840, Length=310, Percent_Identity=30.9677419354839, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI13376164, Length=310, Percent_Identity=30.9677419354839, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI27597073, Length=326, Percent_Identity=22.0858895705521, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17554012, Length=309, Percent_Identity=29.7734627831715, Blast_Score=131, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17562298, Length=295, Percent_Identity=27.1186440677966, Blast_Score=114, Evalue=6e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 35650; Mature: 35650
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVA CCCCCHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEC PNLRGFEHSSAPADVAAYRPKHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHD CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC WGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAAQQAASAYMNFLIRPDAEALL CCCEEEEEECCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHW CCCCCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEE IVHEQPERVAAHLQQFLQVSAPNCY EEECCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVA CCCCCHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEC PNLRGFEHSSAPADVAAYRPKHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHD CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC WGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAAQQAASAYMNFLIRPDAEALL CCCEEEEEECCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHW CCCCCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEE IVHEQPERVAAHLQQFLQVSAPNCY EEECCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]