| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786648
Identifier: 91786648
GI number: 91786648
Start: 761586
End: 762833
Strand: Reverse
Name: 91786648
Synonym: Bpro_0746
Alternate gene names: NA
Gene position: 762833-761586 (Counterclockwise)
Preceding gene: 91786652
Following gene: 91786647
Centisome position: 14.67
GC content: 62.5
Gene sequence:
>1248_bases ATGAAAAAACTGACCCTTGTCGCCACCGCAGTGATGGGACTTTTGTCCACCACGGCCGCCATGGCCCAAAGCACCGTGAC TCTTTACGGCCTGCTTGACGGTGGCTACAACCACGTCTCCGGCCTCAGGCAGGGCAGCGTCAACACGATCGCCAGCGGCA TCATGGAAGGTTCACGCTTCGGCCTTCGCGGCACGGAAGACATCGGCGGCGGCTACAAAGCCATCTTCACCCTCGAAAAC CGCTTCGAACTGGATACCGGATCGGTCACCAACCGACCCAACTCCGGCGCCCAGTTGCCTGACCGCCTGAGCAATGCCGC GCTGATGGGCCTGCCTGGCGCCGTGCAGCCAGTCCTTAACGCCGTCGGCGCGAGCATTGGTTCCACGGTGGGCGTGAACA TCGCCGGCAACCTGTTTGACCGCCAGGCCTTTGCCGGCCTGATCACGCCAGTGGGTGCATTCACCTTTGGCCGCCAGTAC ACGCCAGGCTATTTGACCAGCGCAACGTTCGACGCCACACAGACCCAGTCGAGCCTAGCCATGGGCCAGATCGCCACCTT CCCACCCTCCGTCGACATTCGCCTGAGCAATACCGTGCAGTACGGCATTCAGATGAGCGGCGTGACCGCCACGCTGATGT ATGGCGCGGGCGAAGTCGCCGGCGACAATGCCAAGGGTCGTTTTTATGGCGGCATGGCCATGTACAAGGGCACCGGCTTC TCGGTGGGCGTGGGCCACAACACGCGCAACAACGAACTGGGTCAAAAATCCCTGACCGACACCGTCCTTGGCGCTACGGT CAATGTGGGACCCGGCACCGTCTATGGCCAGTATGCCAAGATCAAGGACGACAACCCCACGGGCTTGTCCACCATCGCTG CGACGGTGACCCCCTCGGTTGGCGCAGCGACCGCCGCCCTGATTCAAAACGCCTACATCAACGGCTTCAAGCAGGACGCC AACCTCATGCACATTGGCTATCGCTTGACCCGCGGCGTTCACACGGTCGTGGTGGCTTACAACCGGCTGGATGACAAGCG CCCGAACAACGCGGACACCGCCTCCTACGGCGCGACCTACACCTATGCGCTGTCCAAGCGCACCAACCTCAATGCGGTGT TGACCCGCTTCAACAACAAGGGCCTGGGTCAGGCGGCTCCTGGCGGCAACGGCTTCCTGGGCGGCGTGACGTCCACCGCG GGCACGGACTCCACCAACATCGCCTTCGGTATCCGTCACACGTTCTGA
Upstream 100 bases:
>100_bases CCTACGACAGGACATATTGGCCGCTCATTTTTTCTTTCGGTTTTTGTTTTTTGCTTTTTGCTTTTTGCTTTTCTTGTCAA TTAGAACTTTTGGAGACTCC
Downstream 100 bases:
>100_bases TCAGGTCCAGGAACACCGCAGAAACGCCGCAGAGGCCCGCCAGCAGCGGGCCTCTCGGTCAAACACCATAAAAGCTCCCT TTTGGGAGCTTTTTTGTTTC
Product: Outer membrane protein (porin)-like protein
Products: NA
Alternate protein names: Outer Membrane Protein; OmpC Family Outer Membrane Porin; Outer Membrane Porin; Outer Membrane Porin Protein; Outer Membrane Porin OpcP; Porin Signal Peptide Protein; Outer Membrane Porin OmpC Family Protein; Gram-Negative Type Outer Membrane Porin Protein; Gram-Negative Porin; Outer Membrane Protein Signal Peptide Protein; Outer Membrane Protein-Like Protein; Porin Transmembrane Protein; Outer Membrane Protein-Like; Transmembrane Outer Membrane Porin Signal Peptide Protein; Porin Protein; Outer Membrane Pore Protein
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MKKLTLVATAVMGLLSTTAAMAQSTVTLYGLLDGGYNHVSGLRQGSVNTIASGIMEGSRFGLRGTEDIGGGYKAIFTLEN RFELDTGSVTNRPNSGAQLPDRLSNAALMGLPGAVQPVLNAVGASIGSTVGVNIAGNLFDRQAFAGLITPVGAFTFGRQY TPGYLTSATFDATQTQSSLAMGQIATFPPSVDIRLSNTVQYGIQMSGVTATLMYGAGEVAGDNAKGRFYGGMAMYKGTGF SVGVGHNTRNNELGQKSLTDTVLGATVNVGPGTVYGQYAKIKDDNPTGLSTIAATVTPSVGAATAALIQNAYINGFKQDA NLMHIGYRLTRGVHTVVVAYNRLDDKRPNNADTASYGATYTYALSKRTNLNAVLTRFNNKGLGQAAPGGNGFLGGVTSTA GTDSTNIAFGIRHTF
Sequences:
>Translated_415_residues MKKLTLVATAVMGLLSTTAAMAQSTVTLYGLLDGGYNHVSGLRQGSVNTIASGIMEGSRFGLRGTEDIGGGYKAIFTLEN RFELDTGSVTNRPNSGAQLPDRLSNAALMGLPGAVQPVLNAVGASIGSTVGVNIAGNLFDRQAFAGLITPVGAFTFGRQY TPGYLTSATFDATQTQSSLAMGQIATFPPSVDIRLSNTVQYGIQMSGVTATLMYGAGEVAGDNAKGRFYGGMAMYKGTGF SVGVGHNTRNNELGQKSLTDTVLGATVNVGPGTVYGQYAKIKDDNPTGLSTIAATVTPSVGAATAALIQNAYINGFKQDA NLMHIGYRLTRGVHTVVVAYNRLDDKRPNNADTASYGATYTYALSKRTNLNAVLTRFNNKGLGQAAPGGNGFLGGVTSTA GTDSTNIAFGIRHTF >Mature_415_residues MKKLTLVATAVMGLLSTTAAMAQSTVTLYGLLDGGYNHVSGLRQGSVNTIASGIMEGSRFGLRGTEDIGGGYKAIFTLEN RFELDTGSVTNRPNSGAQLPDRLSNAALMGLPGAVQPVLNAVGASIGSTVGVNIAGNLFDRQAFAGLITPVGAFTFGRQY TPGYLTSATFDATQTQSSLAMGQIATFPPSVDIRLSNTVQYGIQMSGVTATLMYGAGEVAGDNAKGRFYGGMAMYKGTGF SVGVGHNTRNNELGQKSLTDTVLGATVNVGPGTVYGQYAKIKDDNPTGLSTIAATVTPSVGAATAALIQNAYINGFKQDA NLMHIGYRLTRGVHTVVVAYNRLDDKRPNNADTASYGATYTYALSKRTNLNAVLTRFNNKGLGQAAPGGNGFLGGVTSTA GTDSTNIAFGIRHTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43014; Mature: 43014
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLTLVATAVMGLLSTTAAMAQSTVTLYGLLDGGYNHVSGLRQGSVNTIASGIMEGSRF CCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCC GLRGTEDIGGGYKAIFTLENRFELDTGSVTNRPNSGAQLPDRLSNAALMGLPGAVQPVLN CCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCHHHHCCCEEECCCHHHHHHHH AVGASIGSTVGVNIAGNLFDRQAFAGLITPVGAFTFGRQYTPGYLTSATFDATQTQSSLA HHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHH MGQIATFPPSVDIRLSNTVQYGIQMSGVTATLMYGAGEVAGDNAKGRFYGGMAMYKGTGF HCCEECCCCCEEEEECCEEEECEEECCCEEEEEECCCCCCCCCCCCEEECCEEEEECCCE SVGVGHNTRNNELGQKSLTDTVLGATVNVGPGTVYGQYAKIKDDNPTGLSTIAATVTPSV EEECCCCCCCCCCCHHHHHHHHHCEEEECCCCCEEECEEEECCCCCCCHHEEEEECCCCC GAATAALIQNAYINGFKQDANLMHIGYRLTRGVHTVVVAYNRLDDKRPNNADTASYGATY HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCEEEEEEEEHHCCCCCCCCCCCCCCCCEE TYALSKRTNLNAVLTRFNNKGLGQAAPGGNGFLGGVTSTAGTDSTNIAFGIRHTF EEEECCCCCCHHEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKKLTLVATAVMGLLSTTAAMAQSTVTLYGLLDGGYNHVSGLRQGSVNTIASGIMEGSRF CCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCC GLRGTEDIGGGYKAIFTLENRFELDTGSVTNRPNSGAQLPDRLSNAALMGLPGAVQPVLN CCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCHHHHCCCEEECCCHHHHHHHH AVGASIGSTVGVNIAGNLFDRQAFAGLITPVGAFTFGRQYTPGYLTSATFDATQTQSSLA HHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHH MGQIATFPPSVDIRLSNTVQYGIQMSGVTATLMYGAGEVAGDNAKGRFYGGMAMYKGTGF HCCEECCCCCEEEEECCEEEECEEECCCEEEEEECCCCCCCCCCCCEEECCEEEEECCCE SVGVGHNTRNNELGQKSLTDTVLGATVNVGPGTVYGQYAKIKDDNPTGLSTIAATVTPSV EEECCCCCCCCCCCHHHHHHHHHCEEEECCCCCEEECEEEECCCCCCCHHEEEEECCCCC GAATAALIQNAYINGFKQDANLMHIGYRLTRGVHTVVVAYNRLDDKRPNNADTASYGATY HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCEEEEEEEEHHCCCCCCCCCCCCCCCCEE TYALSKRTNLNAVLTRFNNKGLGQAAPGGNGFLGGVTSTAGTDSTNIAFGIRHTF EEEECCCCCCHHEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA