Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91786448

Identifier: 91786448

GI number: 91786448

Start: 540474

End: 541106

Strand: Reverse

Name: 91786448

Synonym: Bpro_0542

Alternate gene names: NA

Gene position: 541106-540474 (Counterclockwise)

Preceding gene: 91786451

Following gene: 91786447

Centisome position: 10.41

GC content: 63.82

Gene sequence:

>633_bases
ATGCTCTCGATAATTCGTTCCATGAATCGCGGCCCAGAGCACCAGGACAAAGCACCGATCCATCCCGTATGGATGCGCAT
CACGCACTGGTTGAATGCCCTCGCCGTGCTGGTGCTGGGTGCTAGTGGCTGGCGCCTCTACAACGCGGCGCCATTCTTCC
CTTTCAACATCCCCAGGCAACTCACACTCGGGGGCTGGCTCGGCGGTGCGCTTCAATGGCACTTTGCCGCCATGTGGGTG
CTGGGCGTCAATGGCCTGCTGTACCTGGCCTTCAACCTCGCCACCGGCCGCCTGCTGCGCAAGTTCTTTCCGCTCTCTCC
CCGGGCCCTGCTGGCCGATCTGCAGGCCGCGCTCAAGGGCCGGCTCGCCCATGCCGACCCGCGGCATTACAACATGGTGC
AGCGCCTGGCCTACCTGTTTGTGATGGTCGACAGCGTCCTGCTGGTGATCTCTGGCCTGGTGCTCTGGAAGTCGGTGCAA
TTCCCGCTGCTGCGCGAGCTGATGGGTGGCTACGAAGGCGCCCGGTTGGTGCACTTTTTCGCCATGGCCGCACTGGCCGC
GTTTGTGGCGGTTCACCTGGTGATGGTGGCGCTGGTGCCGCGCACGCTGCTGTACATGGTTCGCGGCCGCTAA

Upstream 100 bases:

>100_bases
CAAAACGCGCTTAGCGGATTCCATGGAATGGATTATCCCGCGATATCGCCCTTGAGGTTGTCACGATTAATTGAACTCTT
TGTGATGAATCGGTCATTGC

Downstream 100 bases:

>100_bases
GGAGCCTGACGTGATGATCAAAACCCCTCCCCGCCTGGCCATTGACGGCGACGCCGTGCTCAAGGAAGCCGTGAGCCGAA
TCAGCCACGCCAGTCGCATC

Product: putative transmembrane hydrogenase cytochrome b-type subunit oxidoreductase protein

Products: NA

Alternate protein names: Cytochrome B; Transmembrane Hydrogenase Cytochrome B-Type Subunit; HupC/HyaC/HydC Family Protein; Thiosulfate Reductase Cytochrome Subunit B; Thiosulfate Reductase Cytochrome B Subunit-Like Protein; Transmembrane Hydrogenase Cytochrome B- Type Subunit; Cytochrome; Conserved Protein; B-Type Cytochomre; Transmembrane Hydrogenase Cytochrome

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLSIIRSMNRGPEHQDKAPIHPVWMRITHWLNALAVLVLGASGWRLYNAAPFFPFNIPRQLTLGGWLGGALQWHFAAMWV
LGVNGLLYLAFNLATGRLLRKFFPLSPRALLADLQAALKGRLAHADPRHYNMVQRLAYLFVMVDSVLLVISGLVLWKSVQ
FPLLRELMGGYEGARLVHFFAMAALAAFVAVHLVMVALVPRTLLYMVRGR

Sequences:

>Translated_210_residues
MLSIIRSMNRGPEHQDKAPIHPVWMRITHWLNALAVLVLGASGWRLYNAAPFFPFNIPRQLTLGGWLGGALQWHFAAMWV
LGVNGLLYLAFNLATGRLLRKFFPLSPRALLADLQAALKGRLAHADPRHYNMVQRLAYLFVMVDSVLLVISGLVLWKSVQ
FPLLRELMGGYEGARLVHFFAMAALAAFVAVHLVMVALVPRTLLYMVRGR
>Mature_210_residues
MLSIIRSMNRGPEHQDKAPIHPVWMRITHWLNALAVLVLGASGWRLYNAAPFFPFNIPRQLTLGGWLGGALQWHFAAMWV
LGVNGLLYLAFNLATGRLLRKFFPLSPRALLADLQAALKGRLAHADPRHYNMVQRLAYLFVMVDSVLLVISGLVLWKSVQ
FPLLRELMGGYEGARLVHFFAMAALAAFVAVHLVMVALVPRTLLYMVRGR

Specific function: Unknown

COG id: COG4117

COG function: function code C; Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23609; Mature: 23609

Theoretical pI: Translated: 11.77; Mature: 11.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIIRSMNRGPEHQDKAPIHPVWMRITHWLNALAVLVLGASGWRLYNAAPFFPFNIPRQ
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCC
LTLGGWLGGALQWHFAAMWVLGVNGLLYLAFNLATGRLLRKFFPLSPRALLADLQAALKG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
RLAHADPRHYNMVQRLAYLFVMVDSVLLVISGLVLWKSVQFPLLRELMGGYEGARLVHFF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHH
AMAALAAFVAVHLVMVALVPRTLLYMVRGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSIIRSMNRGPEHQDKAPIHPVWMRITHWLNALAVLVLGASGWRLYNAAPFFPFNIPRQ
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCC
LTLGGWLGGALQWHFAAMWVLGVNGLLYLAFNLATGRLLRKFFPLSPRALLADLQAALKG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
RLAHADPRHYNMVQRLAYLFVMVDSVLLVISGLVLWKSVQFPLLRELMGGYEGARLVHFF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHH
AMAALAAFVAVHLVMVALVPRTLLYMVRGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA