| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786451
Identifier: 91786451
GI number: 91786451
Start: 543515
End: 544054
Strand: Reverse
Name: 91786451
Synonym: Bpro_0545
Alternate gene names: NA
Gene position: 544054-543515 (Counterclockwise)
Preceding gene: 91786454
Following gene: 91786448
Centisome position: 10.46
GC content: 59.07
Gene sequence:
>540_bases ATGTGGCGAGGGCTGCTGCGAGCGGAGTGCCAGCACTTGAGTTACGGCGCTTCGGCGCGAAAATTATGTTTATCACAGAA AAGCTACATGGTGAAGCGAACTAGCCTAGAGGGTGCAGATTGCCCAGTTGCGCGCTCTCTGGATGTCATCGGCGATTGGT GGTCGCTTCTGATAGTTCGGGACGCGCTGGACGGGCTGCGTCGTTTTGGCGAGTTCCAGAAGAGCCTTGGCCTGGCCAAA AACATCCTCGCAACCCGACTCAAGGCCCTCGTGGCCAACGGCATTCTCGAGCTGGCACCGGCCTCTGATGGGAGCGCGTT CCAGGAGTACGTGCTGACAGTCAAGGGTCGCGATCTGTTCTACGTCGTAGCTAGCCTGCGCCAATGGGGTGACGACTATT TCTTTGAGTCTGGTCAGGCACGCACGAAGCTGGTCGACAGGGCGGACGGCAAGCCCATTCGGAAGCTTGAGGTACGGGCC AAGGACGGAAGGGTGCTCTCGCCGGAGGATACTGTCGTACGGAAGGCGAGCGCTCACTAA
Upstream 100 bases:
>100_bases TTATGATGCAACTAGTGTGCAAAACCCGGAGCCCGAAGAGGGAAATGGTTGGCCCTAAATCAGCCTCACAGGGAGATTCG CGGGAACATCTCTGCTACGA
Downstream 100 bases:
>100_bases GTCGTGCGAGTCGCGTCAGGTCCTCGGTAGGCTGGGAAGCCCAGTGGGGGGGTTCAATTTCGGTGCCATGGTGCAAAAAG AGGCACGTGGGCATCGAGGC
Product: putative transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MWRGLLRAECQHLSYGASARKLCLSQKSYMVKRTSLEGADCPVARSLDVIGDWWSLLIVRDALDGLRRFGEFQKSLGLAK NILATRLKALVANGILELAPASDGSAFQEYVLTVKGRDLFYVVASLRQWGDDYFFESGQARTKLVDRADGKPIRKLEVRA KDGRVLSPEDTVVRKASAH
Sequences:
>Translated_179_residues MWRGLLRAECQHLSYGASARKLCLSQKSYMVKRTSLEGADCPVARSLDVIGDWWSLLIVRDALDGLRRFGEFQKSLGLAK NILATRLKALVANGILELAPASDGSAFQEYVLTVKGRDLFYVVASLRQWGDDYFFESGQARTKLVDRADGKPIRKLEVRA KDGRVLSPEDTVVRKASAH >Mature_179_residues MWRGLLRAECQHLSYGASARKLCLSQKSYMVKRTSLEGADCPVARSLDVIGDWWSLLIVRDALDGLRRFGEFQKSLGLAK NILATRLKALVANGILELAPASDGSAFQEYVLTVKGRDLFYVVASLRQWGDDYFFESGQARTKLVDRADGKPIRKLEVRA KDGRVLSPEDTVVRKASAH
Specific function: Unknown
COG id: COG1733
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002577 - InterPro: IPR011991 [H]
Pfam domain/function: PF01638 DUF24 [H]
EC number: NA
Molecular weight: Translated: 19959; Mature: 19959
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS51118 HTH_HXLR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRGLLRAECQHLSYGASARKLCLSQKSYMVKRTSLEGADCPVARSLDVIGDWWSLLIVR CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH DALDGLRRFGEFQKSLGLAKNILATRLKALVANGILELAPASDGSAFQEYVLTVKGRDLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHHHHHCCCCHHH YVVASLRQWGDDYFFESGQARTKLVDRADGKPIRKLEVRAKDGRVLSPEDTVVRKASAH HHHHHHHHHCHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCEECCCHHHHHHCCCC >Mature Secondary Structure MWRGLLRAECQHLSYGASARKLCLSQKSYMVKRTSLEGADCPVARSLDVIGDWWSLLIVR CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH DALDGLRRFGEFQKSLGLAKNILATRLKALVANGILELAPASDGSAFQEYVLTVKGRDLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCHHHHHHHHHCCCCHHH YVVASLRQWGDDYFFESGQARTKLVDRADGKPIRKLEVRAKDGRVLSPEDTVVRKASAH HHHHHHHHHCHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCEECCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]