| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is gsiD [H]
Identifier: 91786292
GI number: 91786292
Start: 395281
End: 396216
Strand: Direct
Name: gsiD [H]
Synonym: Bpro_0382
Alternate gene names: 91786292
Gene position: 395281-396216 (Clockwise)
Preceding gene: 91786291
Following gene: 91786293
Centisome position: 7.6
GC content: 62.5
Gene sequence:
>936_bases ATGGCGGCATTGACAGCTTCCTCTTCCGCTGATGCAGGCATTTCCAGTGCTTCAGCGGCCCCGGCGATGCCGTCGGCAAG CCTGCCCGCGCAACGCTCGCGGGGCTACTGGACGGCGGCAATGCTGCGCTTTGTGCATGACCCGGTGGCGGTCGGTGCCG TGCTTGTCGTGCTGATGCTGATTGCGATGGCCATCTTCGGCCCCTGGCTGGCACCGGCTGATCCCTACGACGCGTCCATG CTGAAACGGCTCAAGCCGATCGGCACGGCAGGCTTGCCGCTGGGCAGCGACGAGCTTGGCCGCGATATGCTGTCGCGCCT GATCATGGGTGCGCGGCTGTCACTCTTCATCGGCATCACGCCGGTAATCCTCGCATTTTTCACGGGCTCGGTGATCGGAA TCGTGGCGGGCTATGCGGGCGGTATCGTCAACACCGCCATCATGCGCACGATTGATGTGTTCTATGCCTTTCCCTCGGTG CTGCTCGCGATTGCGCTTTCAGGCGTGCTGGGAGCGGGCGTTGTCAATTCGCTGATCTCGCTGACCATTGTGTTTATTCC GCAAATCGCGCGCGTCGCGGAGAGCGTAACCACCCAGGTGCGCGGACGCGACTACGTCGAGGCGGCGCGTGCATCGGGCG CCAATGCGTTCACCATCGTGCGGGTGCATGTTCTCGGCAACGTGCTGGGGCCGATTTTTGTCTACGCCACCAGCCTGATT GCCGTGTCGATGATCCTGGCTTCGGGCCTGTCGTTCCTCGGTCTGGGCGTGAAGCCGCCCGAGCCCGAGTGGGGACTGAT GCTCAATACGCTGCGAACAGCGCTGTATGTCCAGCCGTGGGTCGCCGCGCTTCCGGGGGTGATGATCTTCATCACATCCA TTGCATTCAATATTCTGTCCGACGGTCTGCGTTCGGCCATGGACAACAAGGGCTGA
Upstream 100 bases:
>100_bases CTCTTCTTTGTACTGCTCAATTTTCTGGTCGATGTATTGCAGACCCTGCTCGACCCGCGTATTGCACGCACCTGAGAAGC GAAAAACACCAAGGACGAAC
Downstream 100 bases:
>100_bases CATGATGCAACAAACACCTGATGTCGGCGGTCCGGCCCAGCCCCTGCTCACTATCCGCGGGCTGCAAAAGCACTTTGCGA TCAAGGGCGGGCCGCTCGGC
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MAALTASSSADAGISSASAAPAMPSASLPAQRSRGYWTAAMLRFVHDPVAVGAVLVVLMLIAMAIFGPWLAPADPYDASM LKRLKPIGTAGLPLGSDELGRDMLSRLIMGARLSLFIGITPVILAFFTGSVIGIVAGYAGGIVNTAIMRTIDVFYAFPSV LLAIALSGVLGAGVVNSLISLTIVFIPQIARVAESVTTQVRGRDYVEAARASGANAFTIVRVHVLGNVLGPIFVYATSLI AVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTALYVQPWVAALPGVMIFITSIAFNILSDGLRSAMDNKG
Sequences:
>Translated_311_residues MAALTASSSADAGISSASAAPAMPSASLPAQRSRGYWTAAMLRFVHDPVAVGAVLVVLMLIAMAIFGPWLAPADPYDASM LKRLKPIGTAGLPLGSDELGRDMLSRLIMGARLSLFIGITPVILAFFTGSVIGIVAGYAGGIVNTAIMRTIDVFYAFPSV LLAIALSGVLGAGVVNSLISLTIVFIPQIARVAESVTTQVRGRDYVEAARASGANAFTIVRVHVLGNVLGPIFVYATSLI AVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTALYVQPWVAALPGVMIFITSIAFNILSDGLRSAMDNKG >Mature_310_residues AALTASSSADAGISSASAAPAMPSASLPAQRSRGYWTAAMLRFVHDPVAVGAVLVVLMLIAMAIFGPWLAPADPYDASML KRLKPIGTAGLPLGSDELGRDMLSRLIMGARLSLFIGITPVILAFFTGSVIGIVAGYAGGIVNTAIMRTIDVFYAFPSVL LAIALSGVLGAGVVNSLISLTIVFIPQIARVAESVTTQVRGRDYVEAARASGANAFTIVRVHVLGNVLGPIFVYATSLIA VSMILASGLSFLGLGVKPPEPEWGLMLNTLRTALYVQPWVAALPGVMIFITSIAFNILSDGLRSAMDNKG
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=289, Percent_Identity=40.8304498269896, Blast_Score=204, Evalue=6e-54, Organism=Escherichia coli, GI1787760, Length=286, Percent_Identity=34.2657342657343, Blast_Score=181, Evalue=4e-47, Organism=Escherichia coli, GI1789964, Length=291, Percent_Identity=36.426116838488, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=38.5892116182573, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1787498, Length=279, Percent_Identity=31.8996415770609, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI1787549, Length=291, Percent_Identity=30.5841924398625, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI1788505, Length=221, Percent_Identity=28.5067873303167, Blast_Score=76, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32334; Mature: 32202
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALTASSSADAGISSASAAPAMPSASLPAQRSRGYWTAAMLRFVHDPVAVGAVLVVLML CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH IAMAIFGPWLAPADPYDASMLKRLKPIGTAGLPLGSDELGRDMLSRLIMGARLSLFIGIT HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH PVILAFFTGSVIGIVAGYAGGIVNTAIMRTIDVFYAFPSVLLAIALSGVLGAGVVNSLIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTIVFIPQIARVAESVTTQVRGRDYVEAARASGANAFTIVRVHVLGNVLGPIFVYATSLI HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTALYVQPWVAALPGVMIFITSIAFNILS HHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DGLRSAMDNKG HHHHHHHCCCC >Mature Secondary Structure AALTASSSADAGISSASAAPAMPSASLPAQRSRGYWTAAMLRFVHDPVAVGAVLVVLML CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH IAMAIFGPWLAPADPYDASMLKRLKPIGTAGLPLGSDELGRDMLSRLIMGARLSLFIGIT HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH PVILAFFTGSVIGIVAGYAGGIVNTAIMRTIDVFYAFPSVLLAIALSGVLGAGVVNSLIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTIVFIPQIARVAESVTTQVRGRDYVEAARASGANAFTIVRVHVLGNVLGPIFVYATSLI HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVSMILASGLSFLGLGVKPPEPEWGLMLNTLRTALYVQPWVAALPGVMIFITSIAFNILS HHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DGLRSAMDNKG HHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA