| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiC [H]
Identifier: 91786291
GI number: 91786291
Start: 394302
End: 395255
Strand: Direct
Name: gsiC [H]
Synonym: Bpro_0381
Alternate gene names: 91786291
Gene position: 394302-395255 (Clockwise)
Preceding gene: 91786290
Following gene: 91786292
Centisome position: 7.58
GC content: 60.69
Gene sequence:
>954_bases ATGCAGCGTTACCTGTTAAGCCGTGTTTTATATGCCTTGCCCATCATGCTCGGCGTGGCTTTTGTGTGCTTTGCGCTGGT GCATCTGGCGCCGGGTGACCCCCTGATGTCGATCCTGCCGCCCGATGCGTCAGCCGAGCTGCAGGCGCAACTGCGCGAGC TTTATGGCTTCAACCGTTCCCTGCCCGAACAGTTTGCGCTGTGGGTCTGGCGTGCGCTGCAAGGCGACCTGGGGGTGTCC ATTGCCAGTAACCGCCCGGTGGCGACCGAGGTGTTGACTGCGGTCGGCAATACGCTGCGGCTCGCCGTGGTTGCCACCAC CATCGGTTTTGTACTGGGTTGCCTGTTCGGCTTCGTGGCCGGCTACTTCCGCAATTCCTGGATAGACCGCCTGGCGTCCA TGCTGTCGGTGATGGGCGTCAGCGTGCCGCACTACTGGCTGGGCATGGTCATGGTGATCGTGTTTTCTTCCCAGCTCGCG TGGCTGCCCGGGACCGGTGCCGGTCCCGCAGGCTCGGGGGACTGGTCTTGGGACTGGGGGCACCTTCAGTTCCTGGTGCT GCCCGCGCTGACGATGTCAGTCATTCCCATGGGCATCATTGCGCGCACCGTGCGTGCGCTGGTGGCCGACATCCTCGATC AGGAGTTTATTGTCGGCCTGCGTGCCAAAGGCCTGACCCACACAGGCGTATTTTTTCACATGCTGAAGAACGCGGCGCCC ACTGCCCTTGCCGTCATGGGGCTGCAACTGGGTTACCTCCTCGGCGGCTCGATTCTCATAGAAACCGTTTTCTCCTGGCC GGGTACCGGCTTCTTGTTGAATTCTGCAATTTTTCAACGCGACCTACCGCTGCTGCAGGGAACCATCCTCGTCCTTGCGC TCTTCTTTGTACTGCTCAATTTTCTGGTCGATGTATTGCAGACCCTGCTCGACCCGCGTATTGCACGCACCTGA
Upstream 100 bases:
>100_bases AAGCTGGTTTATTGACATCGCCACCATGACGATGGACTGAAACCGGTCCCGACCCCGCCCAGCCAGTCGTCCAGCAGCTT CCACACCCGCGAATCACCTC
Downstream 100 bases:
>100_bases GAAGCGAAAAACACCAAGGACGAACATGGCGGCATTGACAGCTTCCTCTTCCGCTGATGCAGGCATTTCCAGTGCTTCAG CGGCCCCGGCGATGCCGTCG
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MQRYLLSRVLYALPIMLGVAFVCFALVHLAPGDPLMSILPPDASAELQAQLRELYGFNRSLPEQFALWVWRALQGDLGVS IASNRPVATEVLTAVGNTLRLAVVATTIGFVLGCLFGFVAGYFRNSWIDRLASMLSVMGVSVPHYWLGMVMVIVFSSQLA WLPGTGAGPAGSGDWSWDWGHLQFLVLPALTMSVIPMGIIARTVRALVADILDQEFIVGLRAKGLTHTGVFFHMLKNAAP TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLNFLVDVLQTLLDPRIART
Sequences:
>Translated_317_residues MQRYLLSRVLYALPIMLGVAFVCFALVHLAPGDPLMSILPPDASAELQAQLRELYGFNRSLPEQFALWVWRALQGDLGVS IASNRPVATEVLTAVGNTLRLAVVATTIGFVLGCLFGFVAGYFRNSWIDRLASMLSVMGVSVPHYWLGMVMVIVFSSQLA WLPGTGAGPAGSGDWSWDWGHLQFLVLPALTMSVIPMGIIARTVRALVADILDQEFIVGLRAKGLTHTGVFFHMLKNAAP TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLNFLVDVLQTLLDPRIART >Mature_317_residues MQRYLLSRVLYALPIMLGVAFVCFALVHLAPGDPLMSILPPDASAELQAQLRELYGFNRSLPEQFALWVWRALQGDLGVS IASNRPVATEVLTAVGNTLRLAVVATTIGFVLGCLFGFVAGYFRNSWIDRLASMLSVMGVSVPHYWLGMVMVIVFSSQLA WLPGTGAGPAGSGDWSWDWGHLQFLVLPALTMSVIPMGIIARTVRALVADILDQEFIVGLRAKGLTHTGVFFHMLKNAAP TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLNFLVDVLQTLLDPRIART
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=38.4126984126984, Blast_Score=217, Evalue=8e-58, Organism=Escherichia coli, GI1789888, Length=322, Percent_Identity=34.7826086956522, Blast_Score=191, Evalue=5e-50, Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=34.3283582089552, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=34.1614906832298, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=29.2452830188679, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.8388278388278, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=23.2686980609418, Blast_Score=96, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34485; Mature: 34485
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRYLLSRVLYALPIMLGVAFVCFALVHLAPGDPLMSILPPDASAELQAQLRELYGFNRS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCC LPEQFALWVWRALQGDLGVSIASNRPVATEVLTAVGNTLRLAVVATTIGFVLGCLFGFVA CHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH GYFRNSWIDRLASMLSVMGVSVPHYWLGMVMVIVFSSQLAWLPGTGAGPAGSGDWSWDWG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH HLQFLVLPALTMSVIPMGIIARTVRALVADILDQEFIVGLRAKGLTHTGVFFHMLKNAAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLN HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH FLVDVLQTLLDPRIART HHHHHHHHHHCCHHCCC >Mature Secondary Structure MQRYLLSRVLYALPIMLGVAFVCFALVHLAPGDPLMSILPPDASAELQAQLRELYGFNRS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCC LPEQFALWVWRALQGDLGVSIASNRPVATEVLTAVGNTLRLAVVATTIGFVLGCLFGFVA CHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH GYFRNSWIDRLASMLSVMGVSVPHYWLGMVMVIVFSSQLAWLPGTGAGPAGSGDWSWDWG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH HLQFLVLPALTMSVIPMGIIARTVRALVADILDQEFIVGLRAKGLTHTGVFFHMLKNAAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLN HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH FLVDVLQTLLDPRIART HHHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]