| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is arcB [C]
Identifier: 91786139
GI number: 91786139
Start: 248490
End: 250115
Strand: Reverse
Name: arcB [C]
Synonym: Bpro_0228
Alternate gene names: 91786139
Gene position: 250115-248490 (Counterclockwise)
Preceding gene: 91786140
Following gene: 91786138
Centisome position: 4.81
GC content: 64.02
Gene sequence:
>1626_bases ATGGCCGGAGATACGGATTTCCAGTCCCGGCTGCGGGCCATCCGCGCGGGCGGTGTCGGCTATTTCCCCGCCCCGCTGGA TGTACGTTCGCTGCTCGGTTTTCTGGGCCGCATTACCTCCGACGAGCCGTCCAGGCCCTACCGCGTGCTGATCATCGAGG ATGATGAAAGCCTGGCGGGCTTTTATGCCGAGGTGCTGCAATCGGCCGGCATGGAAACCGCCATCGTGACCGACCCCACC ACCGTGACGGGTCTGCTCACGGCATTCCGCCCTGACCTCATCACCTGCGACCTCTACATGCCCGACTGCAACGGCATGGA ACTGGCCGCACTGATTCGCCAGCAGGAAGAGTTTGTCCGCATCCCCATCGTCTTTCTGTCAACAGAGACCAGCTTGGACA AGCAGTCACAGGCGCTCAAGCAAGGCGGCGACGACTTCATCATCAAGCCTGTCGAGCCAGCCAACCTGATCTCGGCGGTG CAAAGCCGGGCCCGTCGCTACCGCAGCCTGCTGGCCGCGGAAGACACGCTGCGCATCAGTGAAGAGCGCTTTCGCCTGGT CTTTGAAAGCAGCCTGGATGGCTTCATCCAGACGCTGGCAGACGGCACCATTGTTTCGGCCAACCAGGCCGCCTGCCACA TGTTTGACATGACGGAGCAGGACTTGCGCCGCGCCGGGCTTGCCGGCCTCGTGGACGGCGCTGACCCGCGGCTGCAGGAT ATGCGGGGCAGTCCCGAGAAATACCGGGGCGAGCTCCTTTGCGTGCGCCGCGGCGGCGTGAAATTCCCTGTCGAAATTTC AGCGTCGCAACACCTCAGCAGCAACGGCGATGTCCAGGGCAGCATCATCGTGCGTGACATCACCGAGCGAAAATCCGCCG AGGAAAGCATCTTGCGGCTCAACGCCGAACTTGAACAACGGGTGGAACGGCGAACCGCTGCGCTGACGGCGGCCAACCAG GAACTGCAGGCTTTTTCGCATTCGCTGGCCCACGACCTGCGGCAACCCTATATTGCCATCAATGGCCTGGCGAGCCTGCT GGAGCGGGAAATGGCGGCCCACCTGACGGCGCGCGGCAAGGATTACCTGAACCGCATACGCGCCGGCGTCAGCCAGATGA ACGACCGCACCGACAGCCTGCTGTCGCTGGCCCAGCTGTCGCAGGCGACGACCCGACCCGAAAAGGTGGACCTGGCGGCA ATCTGCACCGCCGTGCTGGCCACGCTTCAGGCCAAGGAGCCGGGGCGCCAGGTTCAAACCGAGGTCGAGGCGCCGCTGGA AGCCGACGGCGATGCCAGCCTGCTCCAGCACCTGCTCGGGCATTTGCTGGGCAACGCCTGGAAATTCACGTCCCGGCAGG CCAGCGCCGTCATCCGCGTCAGCAGCCAGACCGACGTTGGCGGAAAAACGGTTTACTGCGTCGCGGACAATGGCGCCGGT TTTGAAATGGCCTATGTCGACAAGCTGTTTGGCGCCTTCCAGCGGTTGCATTCCCCCTCGGAGTTTTCAGGCGCCGGCAT TGGCTTGGCGATGGCGCACCGCATCGTCACGCGGCATGGCGGACGGATCTGGGCCGAATCGGCGCCCGGTCAGGGCGCGC GCTTTTACTTCACGCTGGGCGGTTAG
Upstream 100 bases:
>100_bases GCAGCGATCCTGGCCAACGTGGGCCTGCCCGAGGAGGAGCAGCTGGTGCTGCGCGCGCTGGCCCGGCCCTGGCGCATCGG CGGCGGTGCCGCTGATCTTC
Downstream 100 bases:
>100_bases GGCTCGTTTGGGAATAGGTTGTGCATTTGGCCGTCGGATTCGGGATGCGCTGCCAGGCGCGGGGAGCGCCGTGTGGCCAG CCCACACAAGCGAGTCGCAA
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: ORF5 [H]
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MAGDTDFQSRLRAIRAGGVGYFPAPLDVRSLLGFLGRITSDEPSRPYRVLIIEDDESLAGFYAEVLQSAGMETAIVTDPT TVTGLLTAFRPDLITCDLYMPDCNGMELAALIRQQEEFVRIPIVFLSTETSLDKQSQALKQGGDDFIIKPVEPANLISAV QSRARRYRSLLAAEDTLRISEERFRLVFESSLDGFIQTLADGTIVSANQAACHMFDMTEQDLRRAGLAGLVDGADPRLQD MRGSPEKYRGELLCVRRGGVKFPVEISASQHLSSNGDVQGSIIVRDITERKSAEESILRLNAELEQRVERRTAALTAANQ ELQAFSHSLAHDLRQPYIAINGLASLLEREMAAHLTARGKDYLNRIRAGVSQMNDRTDSLLSLAQLSQATTRPEKVDLAA ICTAVLATLQAKEPGRQVQTEVEAPLEADGDASLLQHLLGHLLGNAWKFTSRQASAVIRVSSQTDVGGKTVYCVADNGAG FEMAYVDKLFGAFQRLHSPSEFSGAGIGLAMAHRIVTRHGGRIWAESAPGQGARFYFTLGG
Sequences:
>Translated_541_residues MAGDTDFQSRLRAIRAGGVGYFPAPLDVRSLLGFLGRITSDEPSRPYRVLIIEDDESLAGFYAEVLQSAGMETAIVTDPT TVTGLLTAFRPDLITCDLYMPDCNGMELAALIRQQEEFVRIPIVFLSTETSLDKQSQALKQGGDDFIIKPVEPANLISAV QSRARRYRSLLAAEDTLRISEERFRLVFESSLDGFIQTLADGTIVSANQAACHMFDMTEQDLRRAGLAGLVDGADPRLQD MRGSPEKYRGELLCVRRGGVKFPVEISASQHLSSNGDVQGSIIVRDITERKSAEESILRLNAELEQRVERRTAALTAANQ ELQAFSHSLAHDLRQPYIAINGLASLLEREMAAHLTARGKDYLNRIRAGVSQMNDRTDSLLSLAQLSQATTRPEKVDLAA ICTAVLATLQAKEPGRQVQTEVEAPLEADGDASLLQHLLGHLLGNAWKFTSRQASAVIRVSSQTDVGGKTVYCVADNGAG FEMAYVDKLFGAFQRLHSPSEFSGAGIGLAMAHRIVTRHGGRIWAESAPGQGARFYFTLGG >Mature_540_residues AGDTDFQSRLRAIRAGGVGYFPAPLDVRSLLGFLGRITSDEPSRPYRVLIIEDDESLAGFYAEVLQSAGMETAIVTDPTT VTGLLTAFRPDLITCDLYMPDCNGMELAALIRQQEEFVRIPIVFLSTETSLDKQSQALKQGGDDFIIKPVEPANLISAVQ SRARRYRSLLAAEDTLRISEERFRLVFESSLDGFIQTLADGTIVSANQAACHMFDMTEQDLRRAGLAGLVDGADPRLQDM RGSPEKYRGELLCVRRGGVKFPVEISASQHLSSNGDVQGSIIVRDITERKSAEESILRLNAELEQRVERRTAALTAANQE LQAFSHSLAHDLRQPYIAINGLASLLEREMAAHLTARGKDYLNRIRAGVSQMNDRTDSLLSLAQLSQATTRPEKVDLAAI CTAVLATLQAKEPGRQVQTEVEAPLEADGDASLLQHLLGHLLGNAWKFTSRQASAVIRVSSQTDVGGKTVYCVADNGAGF EMAYVDKLFGAFQRLHSPSEFSGAGIGLAMAHRIVTRHGGRIWAESAPGQGARFYFTLGG
Specific function: Member Of The Two-Component Regulatory System Arcb/Arca. Sensor-Regulator Protein For Anaerobic Repression Of The Arc Modulon. Activates Arca Via A Four-Step Phosphorelay. Arcb Can Also Dephosphorylate Arca By A Reverse Phosphorelay Involving His- 717 And
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 response regulatory domains [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=266, Percent_Identity=28.1954887218045, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1788549, Length=370, Percent_Identity=24.5945945945946, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI145693157, Length=401, Percent_Identity=25.6857855361596, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786912, Length=223, Percent_Identity=29.1479820627803, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787894, Length=260, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1789149, Length=227, Percent_Identity=24.2290748898678, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1788394, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787487, Length=114, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786600, Length=220, Percent_Identity=26.3636363636364, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR011006 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR001789 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00072 Response_reg [H]
EC number: 2.7.3.- [C]
Molecular weight: Translated: 58988; Mature: 58856
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGDTDFQSRLRAIRAGGVGYFPAPLDVRSLLGFLGRITSDEPSRPYRVLIIEDDESLAG CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHH FYAEVLQSAGMETAIVTDPTTVTGLLTAFRPDLITCDLYMPDCNGMELAALIRQQEEFVR HHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHEE IPIVFLSTETSLDKQSQALKQGGDDFIIKPVEPANLISAVQSRARRYRSLLAAEDTLRIS EEEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EERFRLVFESSLDGFIQTLADGTIVSANQAACHMFDMTEQDLRRAGLAGLVDGADPRLQD HHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHCCHHCCCCCCCHHHH MRGSPEKYRGELLCVRRGGVKFPVEISASQHLSSNGDVQGSIIVRDITERKSAEESILRL CCCCCHHHCCCEEEEECCCEEEEEEECCHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH NAELEQRVERRTAALTAANQELQAFSHSLAHDLRQPYIAINGLASLLEREMAAHLTARGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHCCH DYLNRIRAGVSQMNDRTDSLLSLAQLSQATTRPEKVDLAAICTAVLATLQAKEPGRQVQT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH EVEAPLEADGDASLLQHLLGHLLGNAWKFTSRQASAVIRVSSQTDVGGKTVYCVADNGAG HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCC FEMAYVDKLFGAFQRLHSPSEFSGAGIGLAMAHRIVTRHGGRIWAESAPGQGARFYFTLG CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC G C >Mature Secondary Structure AGDTDFQSRLRAIRAGGVGYFPAPLDVRSLLGFLGRITSDEPSRPYRVLIIEDDESLAG CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHH FYAEVLQSAGMETAIVTDPTTVTGLLTAFRPDLITCDLYMPDCNGMELAALIRQQEEFVR HHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHEE IPIVFLSTETSLDKQSQALKQGGDDFIIKPVEPANLISAVQSRARRYRSLLAAEDTLRIS EEEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EERFRLVFESSLDGFIQTLADGTIVSANQAACHMFDMTEQDLRRAGLAGLVDGADPRLQD HHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCHHHHHHHCCHHCCCCCCCHHHH MRGSPEKYRGELLCVRRGGVKFPVEISASQHLSSNGDVQGSIIVRDITERKSAEESILRL CCCCCHHHCCCEEEEECCCEEEEEEECCHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH NAELEQRVERRTAALTAANQELQAFSHSLAHDLRQPYIAINGLASLLEREMAAHLTARGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHCCH DYLNRIRAGVSQMNDRTDSLLSLAQLSQATTRPEKVDLAAICTAVLATLQAKEPGRQVQT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH EVEAPLEADGDASLLQHLLGHLLGNAWKFTSRQASAVIRVSSQTDVGGKTVYCVADNGAG HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCC FEMAYVDKLFGAFQRLHSPSEFSGAGIGLAMAHRIVTRHGGRIWAESAPGQGARFYFTLG CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC G C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7763384 [H]