| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786043
Identifier: 91786043
GI number: 91786043
Start: 136635
End: 137714
Strand: Direct
Name: 91786043
Synonym: Bpro_0132
Alternate gene names: NA
Gene position: 136635-137714 (Clockwise)
Preceding gene: 91786042
Following gene: 91786044
Centisome position: 2.63
GC content: 69.91
Gene sequence:
>1080_bases ATGAGCGGATTCGCACACGCTGGCGTTGCGCGGCGGGCTGCCCTGCTGGGGCTGCTCGGCATGGCGGCCACGGCCACGCT GCCCGCGTGGTCGGCCACTGCCCCGGCCGTGCTGTCGCAAGCCGCCCTGATGACGCCCAAGGCTCTGGGCGCGGCCACGC TGGCCGTGACCCGCGCAGGCAAGCGCCTGGTGGCCGTGGGCGAGCGCGGCACCGTGCTGCTGTCGGACGACCACGGCGCC CGCTGGAAGCAGGCCCAGGTGCCGGTGCAAGCCACCCTCACGACCGTGCGGTTTACCGATGAAAAAACCGGCTGGGCGGC AGGCCATCTGGGCGTGATTTTGCGCAGCATTGACGCCGGCGCCACCTGGCACAAGCAGCTCGACGGCATCCAGGCCGCTG CGCTGGCATTGCAGGCCGCGCAGGGCACGGGAGATGCAAAGGCGATTGCCAATGCCCGGCGCCTGGTGGAAGAGGGCGCG GACAAACCGTTTTTTGACCTGGAATTCATCGACGCGCAACGCGGCTTTGCCGTGGGGGCCTACGGCCTGATGTTCACCAC CGTGGACGGCGGCAAGACCTGGGCGGCGGTGGGGCCGCGTTTGCCCAACCCCAGATCCTTGCACCTGTACGGCGTGCGCG CCCATGGCAGCACGCTGGTGATCGCCGGCGAGCAGGGCTTGCTGCTGCGCTCCACCGATGGGGGTGCCAGCTTTAGCGCG CTGGAGTCGCCCTACAAAGGCAGCTTTTTTGGCTTGCTGCACACCGCTGGCGATGTCTGGGTGGCCTACGGCCTGCGCGG CACGGCCTACCGCTCCACGGACGCGGGCACGCACTGGGAAAAACTCGACACCGGCCTGCCCATGGCTGTCGGCGCGGGCG CGGCTTTGGCCGGCGGCGGCTTTGTGCTGATGGGTCAGGCCGGGGACGCATTGGTGGGGCGCGACGATGGGCCCGCGCTC AAGCGTGTGCCTGCGCGCGAGCCGGTTCCGGTGTCTGGTGTCGCCATCGCAGCCGATGGCAGCCTGGTGCTGGCCAGCCT GCGCGGCATGCGACGGCTGCCTGCCCTGTCTGTTGATTGA
Upstream 100 bases:
>100_bases ACATGGCCTCCAACGAAATGCCCAGGCAGTATGAAATCGTGCCCCCGATTCCGCGCAGCTTCTTCAGCGCTGAATCCTTG TCCAACGAAGGCGCGCGCTG
Downstream 100 bases:
>100_bases AGAAAATTTTATGCACGCCGATTCCTCCTCCATCAACGCATCCAGCCAGCCTGTCGTCGCGCGGCTTGAAGATTTCGACA CGCGCTCCGGCACGCTGCTC
Product: BNR repeat-containing glycosyl hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSGFAHAGVARRAALLGLLGMAATATLPAWSATAPAVLSQAALMTPKALGAATLAVTRAGKRLVAVGERGTVLLSDDHGA RWKQAQVPVQATLTTVRFTDEKTGWAAGHLGVILRSIDAGATWHKQLDGIQAAALALQAAQGTGDAKAIANARRLVEEGA DKPFFDLEFIDAQRGFAVGAYGLMFTTVDGGKTWAAVGPRLPNPRSLHLYGVRAHGSTLVIAGEQGLLLRSTDGGASFSA LESPYKGSFFGLLHTAGDVWVAYGLRGTAYRSTDAGTHWEKLDTGLPMAVGAGAALAGGGFVLMGQAGDALVGRDDGPAL KRVPAREPVPVSGVAIAADGSLVLASLRGMRRLPALSVD
Sequences:
>Translated_359_residues MSGFAHAGVARRAALLGLLGMAATATLPAWSATAPAVLSQAALMTPKALGAATLAVTRAGKRLVAVGERGTVLLSDDHGA RWKQAQVPVQATLTTVRFTDEKTGWAAGHLGVILRSIDAGATWHKQLDGIQAAALALQAAQGTGDAKAIANARRLVEEGA DKPFFDLEFIDAQRGFAVGAYGLMFTTVDGGKTWAAVGPRLPNPRSLHLYGVRAHGSTLVIAGEQGLLLRSTDGGASFSA LESPYKGSFFGLLHTAGDVWVAYGLRGTAYRSTDAGTHWEKLDTGLPMAVGAGAALAGGGFVLMGQAGDALVGRDDGPAL KRVPAREPVPVSGVAIAADGSLVLASLRGMRRLPALSVD >Mature_358_residues SGFAHAGVARRAALLGLLGMAATATLPAWSATAPAVLSQAALMTPKALGAATLAVTRAGKRLVAVGERGTVLLSDDHGAR WKQAQVPVQATLTTVRFTDEKTGWAAGHLGVILRSIDAGATWHKQLDGIQAAALALQAAQGTGDAKAIANARRLVEEGAD KPFFDLEFIDAQRGFAVGAYGLMFTTVDGGKTWAAVGPRLPNPRSLHLYGVRAHGSTLVIAGEQGLLLRSTDGGASFSAL ESPYKGSFFGLLHTAGDVWVAYGLRGTAYRSTDAGTHWEKLDTGLPMAVGAGAALAGGGFVLMGQAGDALVGRDDGPALK RVPAREPVPVSGVAIAADGSLVLASLRGMRRLPALSVD
Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]
COG id: COG4447
COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 BNR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002860 - InterPro: IPR016705 - InterPro: IPR015943 [H]
Pfam domain/function: PF02012 BNR [H]
EC number: NA
Molecular weight: Translated: 36818; Mature: 36686
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGFAHAGVARRAALLGLLGMAATATLPAWSATAPAVLSQAALMTPKALGAATLAVTRAG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHCHHHEEEECCC KRLVAVGERGTVLLSDDHGARWKQAQVPVQATLTTVRFTDEKTGWAAGHLGVILRSIDAG CEEEEECCCCEEEEECCCCCCCHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCC ATWHKQLDGIQAAALALQAAQGTGDAKAIANARRLVEEGADKPFFDLEFIDAQRGFAVGA CHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEE YGLMFTTVDGGKTWAAVGPRLPNPRSLHLYGVRAHGSTLVIAGEQGLLLRSTDGGASFSA EEEEEEEECCCCEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCEEEEECCCCCCHHH LESPYKGSFFGLLHTAGDVWVAYGLRGTAYRSTDAGTHWEKLDTGLPMAVGAGAALAGGG HCCCCCCCEEEEECCCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCEEECCCCEECCCC FVLMGQAGDALVGRDDGPALKRVPAREPVPVSGVAIAADGSLVLASLRGMRRLPALSVD EEEEECCCCEEEECCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SGFAHAGVARRAALLGLLGMAATATLPAWSATAPAVLSQAALMTPKALGAATLAVTRAG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHCHHHEEEECCC KRLVAVGERGTVLLSDDHGARWKQAQVPVQATLTTVRFTDEKTGWAAGHLGVILRSIDAG CEEEEECCCCEEEEECCCCCCCHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCC ATWHKQLDGIQAAALALQAAQGTGDAKAIANARRLVEEGADKPFFDLEFIDAQRGFAVGA CHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEE YGLMFTTVDGGKTWAAVGPRLPNPRSLHLYGVRAHGSTLVIAGEQGLLLRSTDGGASFSA EEEEEEEECCCCEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCEEEEECCCCCCHHH LESPYKGSFFGLLHTAGDVWVAYGLRGTAYRSTDAGTHWEKLDTGLPMAVGAGAALAGGG HCCCCCCCEEEEECCCCCEEEEECCCCCEEECCCCCCCHHHHCCCCCEEECCCCEECCCC FVLMGQAGDALVGRDDGPALKRVPAREPVPVSGVAIAADGSLVLASLRGMRRLPALSVD EEEEECCCCEEEECCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA