The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91786006

Identifier: 91786006

GI number: 91786006

Start: 97094

End: 98335

Strand: Direct

Name: 91786006

Synonym: Bpro_0093

Alternate gene names: NA

Gene position: 97094-98335 (Clockwise)

Preceding gene: 91786005

Following gene: 91786007

Centisome position: 1.87

GC content: 69.89

Gene sequence:

>1242_bases
ATGAGCGAACGTATTCACGCGACCTACTGGCTGGAAACCGGCGATGACCCGCGGCGCGCCGCCGAGGTGATTGCCGGCGA
GCAGTCCAGCGGCACCTTCATCACGCTGCCCAACGAGACACCGGCGCTGAAGGCGCGCTCCGGAGCGCGCATCGAACGGC
TGGAGGTGCTGGAGCAGGTCGGCCAGCCCAGCCTGCCGGTCGCCACGCCGGCCAAGGTCTACACCCGCTGCACGCTGGAG
CTGTCGTGGCCGATCGAGAACCTCGGCCCCTCGTTGCCCAACCTGATGTCGACCATCGCCGGCAACCTGTTCGAGCTGCG
CCAGGTGTCGGGCCTGCGTGTGCTGGACCTGAAACTGCCAGCGTCGTTCGCCGCTGCCTACCCCGGCCCGGCCTTCGGCA
TAGCCGGCACGCGGCGCCTGTCCGGCGTGGCGCAGGGCCCGCTGATCGGCACCATCATCAAGCCCAGCGTCGGGCTGGAC
CCGGCGCAGACGGCCGAGCAGGTGCGCCAGCTGATTGACGGCGGCATCGACTTCATCAAGGACGATGAGCTGCAGGCCGA
CGGGCCGCATTGCCCGTTCGACGAGCGTGTGCGCGCCGTGATGCAGGTGGTCAACGACGCGGCCCAGCGCGACGGGCGCA
AGGTCATGGTGGCCTTCAACCTGACCGGCGACCTGGACCAGATGCGGCGGCGCCACGACCTCGTGCAGTCGCTGGGCGGC
ACCTGCGTGATGGCCAGCCTCAATTCCATAGGCCTGGTCGGCCTGCTCGAGCTGCGCCGCCATGCCAGCCTGCCCATCCA
TGCCCACCGCTGCGGCTGGGGTTATCTCTCGCGCAGCCCGGCGCTGGGCTGGGACTTTGCGCCATGGCACCAGATCTGGC
GCCTGGCGGGTGCCGACCACCTGCATGTCAATGGCCTGGCCAACAAGTTCAGCGAATCCGACGCGAGCGTGATCGCCGCC
GCGCGCGCGGTGCTGAGGCCGCTGTTCGCCCACCAGCCGATGCCGGCCATGCCGGTCTTCAGTTCGGGCCAGACCGGCCT
GCAGGCGCCCGGCACCTATGCGGCGCTCGGCAGCGCGGACCTGATCCATGCCGCTGGCGGCGGCATCTTTGGCCACCCGG
GTGGCATTGCCTCCGGGGTCAGCGCCTTCCGCCAGGCCTGGGAGGCGGCGATGGCTGGCACGCCGCTGCACGAGCATGCC
AAAACGCATGCCGAGCTGCGCAGCGCGCTTGAGTTCTGGTGA

Upstream 100 bases:

>100_bases
TACCGCATCGGCGTGATTTCCGGCGACGGCATAGGCCGCGCCACGACCCGCGAGCTTGGTGACGCCATCGTGCGGGCGCT
GGCGAACTGAAGGAACATCC

Downstream 100 bases:

>100_bases
GCGCCGTGGCCGACAACCGCTGGCCGGACGGCCTGCTGCTCGCCTACTACGGCGACGACTTCACCGGCTCCACCGACGTG
ATGGAGGCCTTCAGCGCGGC

Product: RuBisCo-like protein

Products: 3-phospho-D-glycerate; H+

Alternate protein names: RuBisCO-like protein [H]

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQPSLPVATPAKVYTRCTLE
LSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLD
PAQTAEQVRQLIDGGIDFIKDDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG
TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLHVNGLANKFSESDASVIAA
ARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHA
KTHAELRSALEFW

Sequences:

>Translated_413_residues
MSERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQPSLPVATPAKVYTRCTLE
LSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLD
PAQTAEQVRQLIDGGIDFIKDDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG
TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLHVNGLANKFSESDASVIAA
ARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHA
KTHAELRSALEFW
>Mature_412_residues
SERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQPSLPVATPAKVYTRCTLEL
SWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDP
AQTAEQVRQLIDGGIDFIKDDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGGT
CVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLHVNGLANKFSESDASVIAAA
RAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAK
THAELRSALEFW

Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity [H]

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443 [H]

Pfam domain/function: PF00016 RuBisCO_large [H]

EC number: 4.1.1.39

Molecular weight: Translated: 44241; Mature: 44110

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQV
CCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHC
GQPSLPVATPAKVYTRCTLELSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLP
CCCCCCCCCCHHEEEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
ASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDPAQTAEQVRQLIDGGIDFIK
HHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
DDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADH
EEEEHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE
LHVNGLANKFSESDASVIAAARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSAD
EEECHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
LIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAKTHAELRSALEFW
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQV
CCCEEEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHC
GQPSLPVATPAKVYTRCTLELSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLP
CCCCCCCCCCHHEEEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
ASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDPAQTAEQVRQLIDGGIDFIK
HHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
DDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADH
EEEEHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE
LHVNGLANKFSESDASVIAAARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSAD
EEECHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
LIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAKTHAELRSALEFW
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O

Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]