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The map label for this gene is yidZ [H]

Identifier: 91213236

GI number: 91213236

Start: 4154324

End: 4155292

Strand: Direct

Name: yidZ [H]

Synonym: UTI89_C4264

Alternate gene names: 91213236

Gene position: 4154324-4155292 (Clockwise)

Preceding gene: 91213235

Following gene: 91213237

Centisome position: 82.01

GC content: 52.22

Gene sequence:

>969_bases
TTGCCGCTCATGAAGAAATCCATCACCACGCTTGATCTCAATCTGCTGCTCTGTCTGCAACTGCTGATGCAGGAGCGCAG
CGTGACCAAAGCGGCGAAGCGGATGAACGTGACCCCTTCGGCGGTGAGTAAGTCGCTGGCAAAGTTAAGAGCGTGGTTTG
ACGACCCGCTCTTTGTGAACTCACCGCTGGGCCTGTCTCCCACACCGCTAATGGTCAGCATGGAGCAAAATCTGGCGGAA
TGGATGCAAATGAGCAATCAGTTGCTGGACAAACCACTCCACGAAACGCCGCGCGGTCTTAAGTTCGAACTGGCGGCGGA
ATCGCCGCTGATGATGATCATGCTTAATGCGCTGTCGAAACGGATCTACCAACGATACCCGCAGGCGACCATCAAATTAC
GTAACTGGGATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATTGGTTTTTCCGGTCGCGAAAGTCATCCC
CGTTCGCGGGAGCTGTTAAGCTCGCTACCGTTAGCCATTGATTATGAAGTGCTGTTTAGTGATGTGCCCTGCGTCTGGTT
ACGCAAAGATCATCCGGCACTGCATGAAGCATGGAATCTGGACACCTTTTTACGTTATCCGCATATCAGCATTTGCTGGG
AACAGAGCGATACCTGGGCGCTGGACAATGTGTTACAGGAGCTGGGGCGCGAACGCACGATTGCTATGAGCCTGCCGGAA
TTCGAGCAGTCACTGTTTATGGCAGCACAGCCCGACAATCTGCTACTGGCGACCGCGCCGCGCTACTGCCAGTACTACAA
TCAACTCCACCAACTGCCGTTGGTTGCTCTTCCTCTCCCGTTTGATGAAAGCCAGCAAAAAAAGCTGGAAGTCCCTTTTA
CCCTTCTGTGGCATAAACGGAACAGCCGTAATCCGAAGATCGTCTGGTTACGGGAAACCATTAAAAATCTTTACGCGTCG
ATGGCATAA

Upstream 100 bases:

>100_bases
GTGGTTGGTATCGGCGCATGGAATATGCTGATCGGGATTCTGATTGCCTGTAGCATAGTGAGCCTGTTGCTGATTATGTT
CGTCGCGCCTGGACGCCCCG

Downstream 100 bases:

>100_bases
CCGAATCGTATGAAACGCGACCCAATTTCACAATGAAATGTAAAAAAGTTGTAATAAACTTATCTGAATCGAACTTTTAG
CCGCTTTAGTCTGTCCATCA

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MPLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAE
WMQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHP
RSRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPE
FEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYAS
MA

Sequences:

>Translated_322_residues
MPLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAE
WMQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHP
RSRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPE
FEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYAS
MA
>Mature_321_residues
PLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEW
MQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPR
SRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEF
EQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASM
A

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=319, Percent_Identity=97.4921630094044, Blast_Score=612, Evalue=1e-177,
Organism=Escherichia coli, GI87081766, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081684, Length=331, Percent_Identity=24.4712990936556, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786820, Length=80, Percent_Identity=40, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37252; Mature: 37121

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEC
SPLGLSPTPLMVSMEQNLAEWMQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSK
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCHHHHHHHHHHH
RIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFS
HHHHHCCCCEEEEECCCCCCHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHC
DVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPE
CCCEEEEECCCCHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCH
FEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKR
HHHHHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCEEEEEECC
NSRNPKIVWLRETIKNLYASMA
CCCCCEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
PLMKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEC
SPLGLSPTPLMVSMEQNLAEWMQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSK
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCHHHHHHHHHHH
RIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFS
HHHHHCCCCEEEEECCCCCCHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHC
DVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPE
CCCEEEEECCCCHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCH
FEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKR
HHHHHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCEEEEEECC
NSRNPKIVWLRETIKNLYASMA
CCCCCEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA