Click here to switch to the map view.

The map label for this gene is yhdX [H]

Identifier: 91212700

GI number: 91212700

Start: 3638075

End: 3639274

Strand: Direct

Name: yhdX [H]

Synonym: UTI89_C3711

Alternate gene names: 91212700

Gene position: 3638075-3639274 (Clockwise)

Preceding gene: 91212699

Following gene: 91212701

Centisome position: 71.82

GC content: 49.83

Gene sequence:

>1200_bases
ATGCTTTCCGAGGTTTCTATGTCTCATCGCCGCTCAACCGTTAAAGGCTCACTCTCTTTTGCCAACCCTACGGTTCGCGC
CTGGTTATTCCAGATCCTTGCCGTTGTTGCTGTTGTCGGCATTATTGGTTGGTTATTTCACAACACTGTAACGAATCTCA
GTAATCGCGGCATAACATCAGGATTTGCTTTTCTTGACCGCGGGGCCGGTTTTGGCATCGTTCAGCATTTGATTGATTAT
CAGCAAGGCGACACTTACGGACGCGTTTTTATTGTCGGCCTGCTCAATACGCTACTGGTTTCTGCATTGTGTATTGTGTT
CGCTTCTGTTTTGGGCTTCTTTATCGGTCTGGCGAGACTTTCGGATAACTGGCTGCTACGAAAGCTTTCCACAATTTATA
TTGAGATCTTCCGTAATATTCCGCCATTGCTGCAAATCTTCTTCTGGTACTTTGCCGTGTTGCGCAATTTGCCCGGGCCA
CGCCAGGCAGTGAGCGCACTGGATTTGGTGTTTCTGAGCAATCGTGGGCTTTATATTCCGTCGCCGCAGCTGGGAGATGG
GTTTCTTGCGTTTATCCTGGCTGTTGTTATAGCTATAGTCCTTTCTGTTGGGCTATTCCGCTTTAATAAAACACACCAGA
TAAAGACCGGACAACTGCGCCGCACCTGGCCGATTGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTT
TTTGGCGCAGCACTACACTGGGATGTCCCAGCCCTTCGAGGCTTTAATTTCCGCGGCGGGATGGTTTTAATTCCTGAACT
GGCAGCCTTAACGCTAGCACTTTCGATTTATACCTCTGCATTTATCGCCGAGATTATCCGCGCAGGGATCCAGGCAGTGC
CTTATGGTCAACATGAAGCGGCTCGATCACTGGGATTACCCAACCCGGTAACGCTACGCCGGGTCATTATTCCCCAGGCA
TTGCGGGTGATTATTCCACCGTTAACCAGCCAGTATCTCAACATCGTCAAGAACTCCTCTCTTGCCGCCGCTATTGGCTA
TCCCGATATGGTTTCGCTGTTTGCTGGCACCGTGCTGAACCAAACGGGGCAAGCCATCGAGACGATAGCCATGACCATGT
CGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATCGCGATCGTTGAACGCTAA

Upstream 100 bases:

>100_bases
AATAATCTCTGGAATAACGGCGGTATTCAGTACGCGCCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACG
GCGGCGCTCTCTTCAGCGTT

Downstream 100 bases:

>100_bases
GGAGTCATGATGACAAAAGTATTGCTGTCTCATCCCCCGCGCCTGGCGAGCCATAACTCAAGCCGCGCGATGGTGTGGGT
GCGAAAAAATCTGTTCTCCA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MLSEVSMSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIIGWLFHNTVTNLSNRGITSGFAFLDRGAGFGIVQHLIDY
QQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGP
RQAVSALDLVFLSNRGLYIPSPQLGDGFLAFILAVVIAIVLSVGLFRFNKTHQIKTGQLRRTWPIAAVLIIGLPLLAQWL
FGAALHWDVPALRGFNFRGGMVLIPELAALTLALSIYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRRVIIPQA
LRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER

Sequences:

>Translated_399_residues
MLSEVSMSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIIGWLFHNTVTNLSNRGITSGFAFLDRGAGFGIVQHLIDY
QQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGP
RQAVSALDLVFLSNRGLYIPSPQLGDGFLAFILAVVIAIVLSVGLFRFNKTHQIKTGQLRRTWPIAAVLIIGLPLLAQWL
FGAALHWDVPALRGFNFRGGMVLIPELAALTLALSIYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRRVIIPQA
LRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
>Mature_399_residues
MLSEVSMSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIIGWLFHNTVTNLSNRGITSGFAFLDRGAGFGIVQHLIDY
QQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGP
RQAVSALDLVFLSNRGLYIPSPQLGDGFLAFILAVVIAIVLSVGLFRFNKTHQIKTGQLRRTWPIAAVLIIGLPLLAQWL
FGAALHWDVPALRGFNFRGGMVLIPELAALTLALSIYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRRVIIPQA
LRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=393, Percent_Identity=97.7099236641221, Blast_Score=746, Evalue=0.0,
Organism=Escherichia coli, GI1786874, Length=123, Percent_Identity=39.8373983739837, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788226, Length=171, Percent_Identity=35.672514619883, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786873, Length=124, Percent_Identity=35.4838709677419, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082239, Length=120, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787030, Length=134, Percent_Identity=32.089552238806, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788645, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787087, Length=128, Percent_Identity=27.34375, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43888; Mature: 43888

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]