Click here to switch to the map view.

The map label for this gene is 89885941

Identifier: 89885941

GI number: 89885941

Start: 210875

End: 211540

Strand: Reverse

Name: 89885941

Synonym: Rfer_4455

Alternate gene names: NA

Gene position: 211540-210875 (Counterclockwise)

Preceding gene: 89885942

Following gene: 89885940

Centisome position: 82.17

GC content: 54.5

Gene sequence:

>666_bases
ATGACCAATCAACTTGGAATCGTCGCTCGCCTTGCCAGCGCGCTTCAAAAATTAATGACAGGAGCCAGTCCACAACTTGG
AGCTGACTGCCTGTTGCACGCCCAAATGGCCCAGACTCTTCTCGACCAAGAGGGCGTACCAACCCGATTGGTTTTAGGCG
AGGCTGCTTGGCGCGTTGGCCCGGGTGATGGCGATGTCATAACGCACTCACCCAACGTTGGTGGATTCGCGCCACAAGGT
GCAAAAGCCCTGGCCTACCATGCGTGGCTGGAATCGGGGACGAAGATCATTGATTTCAGCACGCACAGTCTTCGCACCAA
AGCGGCCCAACTGGACGCCTTCGATGGCGGAAAGACCGCCGTCGAGTGGTGTCCACCCTATCTGGTACTTGAGCGAGCGC
AAAGCTTGACCTTGAAGGAAGTCGCACAGGCAGATTCTGCAGGAGTGGCGTGCTATCAGGAAATCCCCGGCCTGCGCGAG
TTCATGATTGAACAATGTCTCGTCAAGGAGGTGGATGCGGGAAATCTACAGCTTTTGAGGCTAGTTTTTGACCAGCCAGA
AATCAAAGTTTTTGGCCCCAACAATCGTCACGATTGTGACGAACTGGTCGAACAAGCCCTGAAGTCAAAGCAATCTCATG
GCGGAGGAGGGACATGGATCTGTTGA

Upstream 100 bases:

>100_bases
AAGACCACCAGCTGGTCATCAAAATCAACTGCCCAGGGCGAACACCGCCCAACTGGGTACGTTCATCTTCCTTGGGCTCA
TTTCGAACGGAGCATGGAAT

Downstream 100 bases:

>100_bases
CACAGATACGTCGCCAAGTCCGGCGACGCAAAGAAAGCAGCACCGGCCAAGTTCGTGGCCTGTACCTTAAGTCTGAGCGA
GGCTCCGAAGTGCAATTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTNQLGIVARLASALQKLMTGASPQLGADCLLHAQMAQTLLDQEGVPTRLVLGEAAWRVGPGDGDVITHSPNVGGFAPQG
AKALAYHAWLESGTKIIDFSTHSLRTKAAQLDAFDGGKTAVEWCPPYLVLERAQSLTLKEVAQADSAGVACYQEIPGLRE
FMIEQCLVKEVDAGNLQLLRLVFDQPEIKVFGPNNRHDCDELVEQALKSKQSHGGGGTWIC

Sequences:

>Translated_221_residues
MTNQLGIVARLASALQKLMTGASPQLGADCLLHAQMAQTLLDQEGVPTRLVLGEAAWRVGPGDGDVITHSPNVGGFAPQG
AKALAYHAWLESGTKIIDFSTHSLRTKAAQLDAFDGGKTAVEWCPPYLVLERAQSLTLKEVAQADSAGVACYQEIPGLRE
FMIEQCLVKEVDAGNLQLLRLVFDQPEIKVFGPNNRHDCDELVEQALKSKQSHGGGGTWIC
>Mature_220_residues
TNQLGIVARLASALQKLMTGASPQLGADCLLHAQMAQTLLDQEGVPTRLVLGEAAWRVGPGDGDVITHSPNVGGFAPQGA
KALAYHAWLESGTKIIDFSTHSLRTKAAQLDAFDGGKTAVEWCPPYLVLERAQSLTLKEVAQADSAGVACYQEIPGLREF
MIEQCLVKEVDAGNLQLLRLVFDQPEIKVFGPNNRHDCDELVEQALKSKQSHGGGGTWIC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23747; Mature: 23616

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQLGIVARLASALQKLMTGASPQLGADCLLHAQMAQTLLDQEGVPTRLVLGEAAWRVG
CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHEEEC
PGDGDVITHSPNVGGFAPQGAKALAYHAWLESGTKIIDFSTHSLRTKAAQLDAFDGGKTA
CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCCH
VEWCPPYLVLERAQSLTLKEVAQADSAGVACYQEIPGLREFMIEQCLVKEVDAGNLQLLR
HHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEHH
LVFDQPEIKVFGPNNRHDCDELVEQALKSKQSHGGGGTWIC
EECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TNQLGIVARLASALQKLMTGASPQLGADCLLHAQMAQTLLDQEGVPTRLVLGEAAWRVG
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHEEEC
PGDGDVITHSPNVGGFAPQGAKALAYHAWLESGTKIIDFSTHSLRTKAAQLDAFDGGKTA
CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCCH
VEWCPPYLVLERAQSLTLKEVAQADSAGVACYQEIPGLREFMIEQCLVKEVDAGNLQLLR
HHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEHH
LVFDQPEIKVFGPNNRHDCDELVEQALKSKQSHGGGGTWIC
EECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA