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The map label for this gene is pmp16 [H]

Identifier: 89898542

GI number: 89898542

Start: 865284

End: 868109

Strand: Direct

Name: pmp16 [H]

Synonym: CF0735

Alternate gene names: 89898542

Gene position: 865284-868109 (Clockwise)

Preceding gene: 89898541

Following gene: 89898543

Centisome position: 74.19

GC content: 41.3

Gene sequence:

>2826_bases
ATGAAACATAAGTTTACTTTTAGCTTCTTTCTCTCAGTAGCGTGGCTAACTTATTTCCACTCTAGCGAGGCACGGGATAT
TCCTTTCTTGCTCCCCACACCTTCCATAGATTCTTTTCTCACCTCTAGTTCGATCAATACCCTTGGAGAACAAACAAATT
TACAGGGACAGATTCAGTCTAACTCTATAAATATGACTTTGAAAGATTACAAAGATATCTATGCTTTATTCCAGATCTCT
TCTAACGGAGAAAAAAGATGCAGATATAATATTCTATCTCTGGAAGCTACTCAAGGACCTATTGTCTTTATTGGCAATAG
TACGAGTAACACAGGGGGAGCTATTTACGCTGATACCAGATTAAAAATCACAGACAGCCAGGAAATTATCCTTTTTGCTA
ACAATCTCGCAAGAGCTTCGTTCGTAAGGAACATATTTGACTATCCAATTTTTTCTGGGGCCGTATATGCCCGCTATGTC
GATATTACACACAACAAACAGCCCGTGTACTTTGTGAAAAATATTGCCGCTTCTGAAGGCGGGGCTATTTTCACTTCTAT
CGATGTTCTTTTAGCAGATAATCAATCCGCATGCTTTTTTTGCGATAATGCAGTTACCCTGACCGACCAGAATAGATGTA
AAGGCGGGGCTCTACGACTGGAACGATTCAACTGCCTGAATAACCGCGGCTCTGTCGTATTCGCCAACAATCTAGCGGGA
GAGGGTGGAGGAATTTCTGCAATCCATCACTGCTCATTCTCAGGAAATCTGGGCAACATTATCTTCAAAAATAACAAAGC
CCTGCGTCGTAGTGGAGGAGCTATGCACTCCCCAACGATCACCTTAGAAAATAATCCAGGAATTATCTCCTTCCATAATA
ATTCATCGGCTGTTCAGGGCGGAGCTTGCCTATGCACTAACTTTACCCTGCGCAACAATAATCACGTCTACTTCACAAAC
AATTCTTCTCCACAAGGGGGGGCCCTATTTACAAATAGCAACTCCCAAGTCAGAATCTCGGCAGATAAAGGGCATGTGAT
TTTTAATAATAATTGCCTACTAGATACCAATAGAGAATACAGAAACTCTATCACCCTAGGAAATAACGCCAATGTGCAAT
TTGGCGCAAAAAAGAATTTTTGCGTTCTTTTCTATGACCCTATACAGCATGAAAATTCTACAACCCATAACCTAATCATT
AATCCCAGTACGGAAGATTTAGGCTGCGTAGTCTTTTCTGGAGCCAAAGTAAATGGCTCCCCAAAAACTGAAAATAATCT
TTTCTCAAGAACGAATAATGCTACTGAGAGCAACCTTTTCTCCAGATCAAAAAATACTATAGAACTACAAAACGGAGTCC
TCGCTATTGAAGATCAAGCCGGTGTCTCTACCTATAAGTTTCAACAGACAGGAGGAACCTTATGTTTAGGAAACGGAGGA
ACTCTAGCAGCAAGAGAAAAAGCCGCTAATGCAAAAGATGCCGCTCTTACAATAAATAACTTGGGAATTATCCTCCCTCA
ACAACTTCAACACAATGCTCAAGCTCCGAAAATCTGGGTCTATCCTTCCGCAAACAACAATACTTTCACAGAAAATACTC
AAGCAACTGTGACCCTATCCGGAAATCTCACTCTAACTAATGAAGAAGGAGACAACCCTTACGATGATGTCGATCTTTCC
AAAAATACGCAACGAGTTCCTCTACTCTATCTTTGCGATAATACCGACAAGAAAATTAACATCACTAATTTGAATATTGA
GGCTATAAATGCGCAGTCGCATTACGGCCATCAGGGCATCTGGTCCCCCTACTGGGAAGAACACACGACACAAACAAATC
CGGCTTCTGCTCTAACAGCAAATACATCGCATAAAACTCTCTATGCCGACTGGACTTCAACGGGATACATTCCCAACCCT
AAATACCAAACGGCTCTTGTAGCTAACGTCCTCTGGGAAACAGTATATACTATGTTATCAGGAATACTTCCTCCTGAACA
CAGTGATCAAATAACAAATATTTATGGAAAGGCTTTAGGGATCATCGCTAATCAACGCTCGCATGCAAAAAAACCGGGAT
TTCGTATGCAATCCCGAGGGTATTCTGTAGGAACCTCAGCAAAAACACAAACGCATCACAAAATATCCTTCGGATTCGTT
CAGTCTTTTGCCCACCTCAAAGAAAAAGGATCAGAAAACAAGGCCGCTTCTAAAAACTATCTAGGAACCTTACAATTCCA
TATCCCCTGGCTTTATGATCGCATCCTAACCTCAGCTTCCCTAGCTTACAACTATGCTCCTCACGAAATAAAACACATAG
CTACTGACCAAACCTCTCAAGGTACTTTCTCTAGTCATACTTGGGGACTCTCCATCACTCATGCCTTCCCTTTCACCCAT
CCCTACATAACTTTGATTCCATTCATAGAAGCTCATGCAATAAAGGCCTCTCTAACCAGTTTTAAAGAAACAGGAAAATT
CCCCAGAAAATTTGCTACAAAGAGCGCTTTGTATAACCTCTCCATGCCCTTAGGAATTACAGGGCAGTGGCATAATACAT
TCCATCTCCCTACAACCTGGAATCTAAAAATCGCTTACCAACCTGTGGTCTACAGACACTACCCTAAAATCTTAACAACA
TTACTCGCCAGCAATGGCAGTTGGCTATCTTCGGGAACACCGGTAGATAGACATTCCTTCTCCTTAAGAGTAGCCAACTC
CGTATGGCTGTTTTCTAAGTTGCAAATGTCATTTGCTTATCAGGGAGATCTTTCTTCTTCTACTTTCTGTAATTATCTAA
AAGCTGGGAGCACATTAGCATTTTAA

Upstream 100 bases:

>100_bases
AGATTACCAAGTAGATCTAGCCTCTTCAACCATAACACACTATGTAAACTGCGGAAGTGAAATTGCCTTTTAATAAATTA
CGGAACTAAGACAACGCCTT

Downstream 100 bases:

>100_bases
AAGTAGAGTTTTCTTAAAGAAACATAGAAACAATATGCAGGATAAAACTATTAAATATTCTATAGATGCCTAGAATTAAA
AAACAAATCACTTATCAACT

Product: polymorphic outer membrane protein E family protein

Products: NA

Alternate protein names: Polymorphic membrane protein 16 [H]

Number of amino acids: Translated: 941; Mature: 941

Protein sequence:

>941_residues
MKHKFTFSFFLSVAWLTYFHSSEARDIPFLLPTPSIDSFLTSSSINTLGEQTNLQGQIQSNSINMTLKDYKDIYALFQIS
SNGEKRCRYNILSLEATQGPIVFIGNSTSNTGGAIYADTRLKITDSQEIILFANNLARASFVRNIFDYPIFSGAVYARYV
DITHNKQPVYFVKNIAASEGGAIFTSIDVLLADNQSACFFCDNAVTLTDQNRCKGGALRLERFNCLNNRGSVVFANNLAG
EGGGISAIHHCSFSGNLGNIIFKNNKALRRSGGAMHSPTITLENNPGIISFHNNSSAVQGGACLCTNFTLRNNNHVYFTN
NSSPQGGALFTNSNSQVRISADKGHVIFNNNCLLDTNREYRNSITLGNNANVQFGAKKNFCVLFYDPIQHENSTTHNLII
NPSTEDLGCVVFSGAKVNGSPKTENNLFSRTNNATESNLFSRSKNTIELQNGVLAIEDQAGVSTYKFQQTGGTLCLGNGG
TLAAREKAANAKDAALTINNLGIILPQQLQHNAQAPKIWVYPSANNNTFTENTQATVTLSGNLTLTNEEGDNPYDDVDLS
KNTQRVPLLYLCDNTDKKINITNLNIEAINAQSHYGHQGIWSPYWEEHTTQTNPASALTANTSHKTLYADWTSTGYIPNP
KYQTALVANVLWETVYTMLSGILPPEHSDQITNIYGKALGIIANQRSHAKKPGFRMQSRGYSVGTSAKTQTHHKISFGFV
QSFAHLKEKGSENKAASKNYLGTLQFHIPWLYDRILTSASLAYNYAPHEIKHIATDQTSQGTFSSHTWGLSITHAFPFTH
PYITLIPFIEAHAIKASLTSFKETGKFPRKFATKSALYNLSMPLGITGQWHNTFHLPTTWNLKIAYQPVVYRHYPKILTT
LLASNGSWLSSGTPVDRHSFSLRVANSVWLFSKLQMSFAYQGDLSSSTFCNYLKAGSTLAF

Sequences:

>Translated_941_residues
MKHKFTFSFFLSVAWLTYFHSSEARDIPFLLPTPSIDSFLTSSSINTLGEQTNLQGQIQSNSINMTLKDYKDIYALFQIS
SNGEKRCRYNILSLEATQGPIVFIGNSTSNTGGAIYADTRLKITDSQEIILFANNLARASFVRNIFDYPIFSGAVYARYV
DITHNKQPVYFVKNIAASEGGAIFTSIDVLLADNQSACFFCDNAVTLTDQNRCKGGALRLERFNCLNNRGSVVFANNLAG
EGGGISAIHHCSFSGNLGNIIFKNNKALRRSGGAMHSPTITLENNPGIISFHNNSSAVQGGACLCTNFTLRNNNHVYFTN
NSSPQGGALFTNSNSQVRISADKGHVIFNNNCLLDTNREYRNSITLGNNANVQFGAKKNFCVLFYDPIQHENSTTHNLII
NPSTEDLGCVVFSGAKVNGSPKTENNLFSRTNNATESNLFSRSKNTIELQNGVLAIEDQAGVSTYKFQQTGGTLCLGNGG
TLAAREKAANAKDAALTINNLGIILPQQLQHNAQAPKIWVYPSANNNTFTENTQATVTLSGNLTLTNEEGDNPYDDVDLS
KNTQRVPLLYLCDNTDKKINITNLNIEAINAQSHYGHQGIWSPYWEEHTTQTNPASALTANTSHKTLYADWTSTGYIPNP
KYQTALVANVLWETVYTMLSGILPPEHSDQITNIYGKALGIIANQRSHAKKPGFRMQSRGYSVGTSAKTQTHHKISFGFV
QSFAHLKEKGSENKAASKNYLGTLQFHIPWLYDRILTSASLAYNYAPHEIKHIATDQTSQGTFSSHTWGLSITHAFPFTH
PYITLIPFIEAHAIKASLTSFKETGKFPRKFATKSALYNLSMPLGITGQWHNTFHLPTTWNLKIAYQPVVYRHYPKILTT
LLASNGSWLSSGTPVDRHSFSLRVANSVWLFSKLQMSFAYQGDLSSSTFCNYLKAGSTLAF
>Mature_941_residues
MKHKFTFSFFLSVAWLTYFHSSEARDIPFLLPTPSIDSFLTSSSINTLGEQTNLQGQIQSNSINMTLKDYKDIYALFQIS
SNGEKRCRYNILSLEATQGPIVFIGNSTSNTGGAIYADTRLKITDSQEIILFANNLARASFVRNIFDYPIFSGAVYARYV
DITHNKQPVYFVKNIAASEGGAIFTSIDVLLADNQSACFFCDNAVTLTDQNRCKGGALRLERFNCLNNRGSVVFANNLAG
EGGGISAIHHCSFSGNLGNIIFKNNKALRRSGGAMHSPTITLENNPGIISFHNNSSAVQGGACLCTNFTLRNNNHVYFTN
NSSPQGGALFTNSNSQVRISADKGHVIFNNNCLLDTNREYRNSITLGNNANVQFGAKKNFCVLFYDPIQHENSTTHNLII
NPSTEDLGCVVFSGAKVNGSPKTENNLFSRTNNATESNLFSRSKNTIELQNGVLAIEDQAGVSTYKFQQTGGTLCLGNGG
TLAAREKAANAKDAALTINNLGIILPQQLQHNAQAPKIWVYPSANNNTFTENTQATVTLSGNLTLTNEEGDNPYDDVDLS
KNTQRVPLLYLCDNTDKKINITNLNIEAINAQSHYGHQGIWSPYWEEHTTQTNPASALTANTSHKTLYADWTSTGYIPNP
KYQTALVANVLWETVYTMLSGILPPEHSDQITNIYGKALGIIANQRSHAKKPGFRMQSRGYSVGTSAKTQTHHKISFGFV
QSFAHLKEKGSENKAASKNYLGTLQFHIPWLYDRILTSASLAYNYAPHEIKHIATDQTSQGTFSSHTWGLSITHAFPFTH
PYITLIPFIEAHAIKASLTSFKETGKFPRKFATKSALYNLSMPLGITGQWHNTFHLPTTWNLKIAYQPVVYRHYPKILTT
LLASNGSWLSSGTPVDRHSFSLRVANSVWLFSKLQMSFAYQGDLSSSTFCNYLKAGSTLAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 103795; Mature: 103795

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKFTFSFFLSVAWLTYFHSSEARDIPFLLPTPSIDSFLTSSSINTLGEQTNLQGQIQS
CCCEEEHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHCCHHHHCCCCCCCEEEEC
NSINMTLKDYKDIYALFQISSNGEKRCRYNILSLEATQGPIVFIGNSTSNTGGAIYADTR
CEEEEEHHHHHCEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCEEEECCE
LKITDSQEIILFANNLARASFVRNIFDYPIFSGAVYARYVDITHNKQPVYFVKNIAASEG
EEEECCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCC
GAIFTSIDVLLADNQSACFFCDNAVTLTDQNRCKGGALRLERFNCLNNRGSVVFANNLAG
CEEEEEEEEEEECCCCEEEEECCEEEECCCCCCCCCCEEEEEEHHCCCCCCEEEEECCCC
EGGGISAIHHCSFSGNLGNIIFKNNKALRRSGGAMHSPTITLENNPGIISFHNNSSAVQG
CCCCEEEEEEEEECCCCCEEEEECCCHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCCC
GACLCTNFTLRNNNHVYFTNNSSPQGGALFTNSNSQVRISADKGHVIFNNNCLLDTNREY
CEEEEEEEEEECCCEEEEECCCCCCCCEEEECCCCEEEEEECCCEEEECCCEEEECCHHH
RNSITLGNNANVQFGAKKNFCVLFYDPIQHENSTTHNLIINPSTEDLGCVVFSGAKVNGS
CCEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEECCEECCC
PKTENNLFSRTNNATESNLFSRSKNTIELQNGVLAIEDQAGVSTYKFQQTGGTLCLGNGG
CCCCCCHHHCCCCCCHHHHHHCCCCEEEECCCEEEEECCCCCEEEEEECCCCEEEECCCC
TLAAREKAANAKDAALTINNLGIILPQQLQHNAQAPKIWVYPSANNNTFTENTQATVTLS
CEEEHHHCCCCCCEEEEEECCCEEECHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEE
GNLTLTNEEGDNPYDDVDLSKNTQRVPLLYLCDNTDKKINITNLNIEAINAQSHYGHQGI
CCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCC
WSPYWEEHTTQTNPASALTANTSHKTLYADWTSTGYIPNPKYQTALVANVLWETVYTMLS
CCCCHHCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GILPPEHSDQITNIYGKALGIIANQRSHAKKPGFRMQSRGYSVGTSAKTQTHHKISFGFV
CCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEHHHH
QSFAHLKEKGSENKAASKNYLGTLQFHIPWLYDRILTSASLAYNYAPHEIKHIATDQTSQ
HHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHEECCCCHHHHEEECCCCCC
GTFSSHTWGLSITHAFPFTHPYITLIPFIEAHAIKASLTSFKETGKFPRKFATKSALYNL
CCCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEE
SMPLGITGQWHNTFHLPTTWNLKIAYQPVVYRHYPKILTTLLASNGSWLSSGTPVDRHSF
CCCCCCCCCCCCEEECCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
SLRVANSVWLFSKLQMSFAYQGDLSSSTFCNYLKAGSTLAF
EEEEECCEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKHKFTFSFFLSVAWLTYFHSSEARDIPFLLPTPSIDSFLTSSSINTLGEQTNLQGQIQS
CCCEEEHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHCCHHHHCCCCCCCEEEEC
NSINMTLKDYKDIYALFQISSNGEKRCRYNILSLEATQGPIVFIGNSTSNTGGAIYADTR
CEEEEEHHHHHCEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCEEEECCE
LKITDSQEIILFANNLARASFVRNIFDYPIFSGAVYARYVDITHNKQPVYFVKNIAASEG
EEEECCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCC
GAIFTSIDVLLADNQSACFFCDNAVTLTDQNRCKGGALRLERFNCLNNRGSVVFANNLAG
CEEEEEEEEEEECCCCEEEEECCEEEECCCCCCCCCCEEEEEEHHCCCCCCEEEEECCCC
EGGGISAIHHCSFSGNLGNIIFKNNKALRRSGGAMHSPTITLENNPGIISFHNNSSAVQG
CCCCEEEEEEEEECCCCCEEEEECCCHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCCC
GACLCTNFTLRNNNHVYFTNNSSPQGGALFTNSNSQVRISADKGHVIFNNNCLLDTNREY
CEEEEEEEEEECCCEEEEECCCCCCCCEEEECCCCEEEEEECCCEEEECCCEEEECCHHH
RNSITLGNNANVQFGAKKNFCVLFYDPIQHENSTTHNLIINPSTEDLGCVVFSGAKVNGS
CCEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEECCEECCC
PKTENNLFSRTNNATESNLFSRSKNTIELQNGVLAIEDQAGVSTYKFQQTGGTLCLGNGG
CCCCCCHHHCCCCCCHHHHHHCCCCEEEECCCEEEEECCCCCEEEEEECCCCEEEECCCC
TLAAREKAANAKDAALTINNLGIILPQQLQHNAQAPKIWVYPSANNNTFTENTQATVTLS
CEEEHHHCCCCCCEEEEEECCCEEECHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEE
GNLTLTNEEGDNPYDDVDLSKNTQRVPLLYLCDNTDKKINITNLNIEAINAQSHYGHQGI
CCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCC
WSPYWEEHTTQTNPASALTANTSHKTLYADWTSTGYIPNPKYQTALVANVLWETVYTMLS
CCCCHHCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GILPPEHSDQITNIYGKALGIIANQRSHAKKPGFRMQSRGYSVGTSAKTQTHHKISFGFV
CCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEHHHH
QSFAHLKEKGSENKAASKNYLGTLQFHIPWLYDRILTSASLAYNYAPHEIKHIATDQTSQ
HHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHEECCCCHHHHEEECCCCCC
GTFSSHTWGLSITHAFPFTHPYITLIPFIEAHAIKASLTSFKETGKFPRKFATKSALYNL
CCCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEE
SMPLGITGQWHNTFHLPTTWNLKIAYQPVVYRHYPKILTTLLASNGSWLSSGTPVDRHSF
CCCCCCCCCCCCEEECCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
SLRVANSVWLFSKLQMSFAYQGDLSSSTFCNYLKAGSTLAF
EEEEECCEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]