| Definition | Chlamydophila felis Fe/C-56, complete genome. |
|---|---|
| Accession | NC_007899 |
| Length | 1,166,239 |
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The map label for this gene is pmp17 [H]
Identifier: 89898543
GI number: 89898543
Start: 868303
End: 871149
Strand: Direct
Name: pmp17 [H]
Synonym: CF0736
Alternate gene names: 89898543
Gene position: 868303-871149 (Clockwise)
Preceding gene: 89898542
Following gene: 89898544
Centisome position: 74.45
GC content: 38.08
Gene sequence:
>2847_bases ATGTACCCCTACACCTATCCATTTTTATGCTTAATTAGCCTGAGTATTTTCTCACAGAAATTAGACTGTCTTGCCAAAGA AAAGGAAGCATGTTCTTGCCATGAAATTACTGGAACCGGTCTTATTTGGCCACGATCAAACCCCTATGGGATTGATCAAG TTCTTAAAAGACCTACCATATCTGTTGGAAATCTTCATAATCAAAATTCTGATATAGATATCACTGATAAAAAGTATTTT TGTGTTAACTATCAATATTATAGAGGGAACGGCGGTGCTATTACAGCTAGAACTCTGAATATCACGAAGAACATTGGCCC CATAATTTTTAGAGAAAATATCACTAATGACAACGGTGGTGCTATTTTCTCACCAAACTGCAACATTACATACAATAAAC AAGAATGTTGTTTCATTAACAATATGGCCAATGTCATGATCGAGACGTCCGATTCTCGCTCTGGTGGAGCCATTAAATGT TCTCAACTCGTTATTTCTAACAATATTGGATGTTGTCAATTTTTAAATAATACAGCTTCTCTATCAGGAGGAGCAATTGC AGCTGACAATGACATCAATATTGCTAATAACTACGGCGCGATAGTTTTAGGCAATAACAAGTGTTTTAAAGAAAAGGGTC AAGGAGGGAGTATATATAGTGCGAACTGCTCTATTACATCCAATTACGCTCCCATAAACTTTATAAATAATCAAGCTGGT TGTGCCGGAGCTGTATACGTTACAGGAACTTGCAAGATCTCTCATAATTCCGAAATTATAAAATTCTTAAATAACTCGAG TTTAAATCAAACAAACGACCCTCCAATTAGATGGAATCCTGGCGGAGGTGCTATTTATTGTACTTCTTGCTCAATTACTA ATAATCCGAAAGGCTTGATTTTTCAGAGTAATTCGTCAAAACGTAATGCGGGCGCAATCTATGCTCAAAATCTCACTATC AAAGATAATGGCCCCATTTTATTTATAAACAACTCTTCAACATGGGGAGCTGCCATTCAAAATTATAATGGCGGACGATT TTATCTCTCAGCTGATTCTGGAGACATCGTATTTAAAAGGAACCTTTCTTTTAAATCTTCGGGAAGTTATAGAAATGCTC TCCACTCGACTGCCAACTTAAATCTACAAATAGGAGCAAGGCAGGGTCATAGTGTTAAGTTTTATGATCCTATTGAAAAT GAGCACCCATCACCTGAGATTCTTATATTTAATCCAGAAAACCATCATCTAGGAACCGTATTATTTTCTGGAGCTGATGT ATCTCCAAATAATACTAATCTTGAGAGTCTCCGGAGCAAAATGAGAAACACATCAAAAATTGCTCATGGTGTGCTGGCTG TTGAAGATAGCGCAGTACTAGCTATTTATAAAATCACACAAGATGAAGGAACTTTACGCCTAGGGAATGGCGCTGTTATT ACTACTACGCAAAGTGCTGGCCAACCGACAACGGTTGGCTGTACGCTTGCTTTTACTAAACTTGCTTTAAATCTTCCTTC TATTTTAGCTAAAGGTGCTCAAGCTCCGAAAATCTGGATCTATCCCTCAGAAAATGGTAATAGGTACACCGAAGATCCGA ATCCAACGATTACCCTTTCTGGAAATTTATCTCTGTTAAACGATGATAATGAGGATCCCTACGACTCTTTAAACCTCTCT AGAAGCATTTCACGTATCCCCTTTCTCTATCTTTGTGATACAACCACTAAGAAAATTACTGTGGATGATCTAAATATTGA AGCCATTAATGATCAACAACATTATGGTCATCAAGGCGTGTGGTCTCCTTATTGGGAGGAATATACAACAACAACAAATC CTACATCAGCACTAACAGCAAATACCTCGCATCGTATACTCTATGCAGATTGGACCCCTACAGGTTATATTCCTAATCCA GAATATCGAGGCGATCTCGTTGCTAACGTCCTTTGGCAAGCTGCATACAACGCTATCTCTGGTCTACATAACCTAACTAC CCCCCCCCCCCGTGCAAGTCGTATAGGGATTGCTGGAGGTGGATCAGGGGCCTATGTCTCACAAAAAACTCGCAACTTAA AACCAGGGTTTGAGTTATTCTCTAGGGGTTACTCTACTCAAGCATCAAGTCCTATAAAGAAGACAAATCATAATTTCGCA TTAAGCTTTTCTCAGTTCTATAGTGAAATAAAAGAGTCTGAGTCGAAAAGCAAAGTCTCTTCCAACTGTTACTTTGCTGG AGCACAACTACAAATACCTTGGCTTAATGAAAATATCCTCTCGTCAGCTTCTCTAGGTTACGCTTATTCACACAACTGTG TAAAAACAAAAAATCAAAATACAAATACCTTATCCCAAGGATATTTCCAAGGCCATACTCTAGGAAGTGAGCTTTGCTGT ATGCTCCCCGAAAGCAAAATCTCAAATTTGCAATTCCGTCCTTTTATCAAAGCTTTGGGCATACATGCTATTCAAGAAAA CTTCACAGAAACTGGAATGCACATCCGCAGTTTTCAAACAAAAGATCCCCTAATTAACGTGACTTTGCCTGTGGGAATCT ATTGTTACACGGAACACGTTGTGAATTTAAAGACCATCTGGGAAATGCAACTTGCCTACTCTCCAACTATCTACAGACAA AAACCTAAAATCACCACTACGCGATTGATAAGTAAAGGCACATGGATCACTTCAGGAACACCTGTAGATCATCATGCAGT CTCTATCTTAATAAAAAATACTACGACTCTACTTAACACAATGAGTCTGAGCATTAATTATCGTGGAGATTTTTCAAAAT CTACACTGTGTAATTTTTTAAATGTAACGAGTGAAATCAAATTTTAG
Upstream 100 bases:
>100_bases ATCAACTCTAACTATCTTTGTTTTATAAAAATCTAGACAATCTTACGTGTACTAGCGTATAGGATAGCTATGTGTGGTCT CAGAGCTTTGTTATCCCCGT
Downstream 100 bases:
>100_bases ACTTAGAAAATAAGTACCCCCATGAAAATACGGTTCTCTACTTCCTTCAGCGCTTATCTTCTGATCTTCTTATTAACTTG TTTATCACTTTCTTTACACG
Product: polymorphic outer membrane protein E family protein
Products: NA
Alternate protein names: Polymorphic membrane protein 15 [H]
Number of amino acids: Translated: 948; Mature: 948
Protein sequence:
>948_residues MYPYTYPFLCLISLSIFSQKLDCLAKEKEACSCHEITGTGLIWPRSNPYGIDQVLKRPTISVGNLHNQNSDIDITDKKYF CVNYQYYRGNGGAITARTLNITKNIGPIIFRENITNDNGGAIFSPNCNITYNKQECCFINNMANVMIETSDSRSGGAIKC SQLVISNNIGCCQFLNNTASLSGGAIAADNDINIANNYGAIVLGNNKCFKEKGQGGSIYSANCSITSNYAPINFINNQAG CAGAVYVTGTCKISHNSEIIKFLNNSSLNQTNDPPIRWNPGGGAIYCTSCSITNNPKGLIFQSNSSKRNAGAIYAQNLTI KDNGPILFINNSSTWGAAIQNYNGGRFYLSADSGDIVFKRNLSFKSSGSYRNALHSTANLNLQIGARQGHSVKFYDPIEN EHPSPEILIFNPENHHLGTVLFSGADVSPNNTNLESLRSKMRNTSKIAHGVLAVEDSAVLAIYKITQDEGTLRLGNGAVI TTTQSAGQPTTVGCTLAFTKLALNLPSILAKGAQAPKIWIYPSENGNRYTEDPNPTITLSGNLSLLNDDNEDPYDSLNLS RSISRIPFLYLCDTTTKKITVDDLNIEAINDQQHYGHQGVWSPYWEEYTTTTNPTSALTANTSHRILYADWTPTGYIPNP EYRGDLVANVLWQAAYNAISGLHNLTTPPPRASRIGIAGGGSGAYVSQKTRNLKPGFELFSRGYSTQASSPIKKTNHNFA LSFSQFYSEIKESESKSKVSSNCYFAGAQLQIPWLNENILSSASLGYAYSHNCVKTKNQNTNTLSQGYFQGHTLGSELCC MLPESKISNLQFRPFIKALGIHAIQENFTETGMHIRSFQTKDPLINVTLPVGIYCYTEHVVNLKTIWEMQLAYSPTIYRQ KPKITTTRLISKGTWITSGTPVDHHAVSILIKNTTTLLNTMSLSINYRGDFSKSTLCNFLNVTSEIKF
Sequences:
>Translated_948_residues MYPYTYPFLCLISLSIFSQKLDCLAKEKEACSCHEITGTGLIWPRSNPYGIDQVLKRPTISVGNLHNQNSDIDITDKKYF CVNYQYYRGNGGAITARTLNITKNIGPIIFRENITNDNGGAIFSPNCNITYNKQECCFINNMANVMIETSDSRSGGAIKC SQLVISNNIGCCQFLNNTASLSGGAIAADNDINIANNYGAIVLGNNKCFKEKGQGGSIYSANCSITSNYAPINFINNQAG CAGAVYVTGTCKISHNSEIIKFLNNSSLNQTNDPPIRWNPGGGAIYCTSCSITNNPKGLIFQSNSSKRNAGAIYAQNLTI KDNGPILFINNSSTWGAAIQNYNGGRFYLSADSGDIVFKRNLSFKSSGSYRNALHSTANLNLQIGARQGHSVKFYDPIEN EHPSPEILIFNPENHHLGTVLFSGADVSPNNTNLESLRSKMRNTSKIAHGVLAVEDSAVLAIYKITQDEGTLRLGNGAVI TTTQSAGQPTTVGCTLAFTKLALNLPSILAKGAQAPKIWIYPSENGNRYTEDPNPTITLSGNLSLLNDDNEDPYDSLNLS RSISRIPFLYLCDTTTKKITVDDLNIEAINDQQHYGHQGVWSPYWEEYTTTTNPTSALTANTSHRILYADWTPTGYIPNP EYRGDLVANVLWQAAYNAISGLHNLTTPPPRASRIGIAGGGSGAYVSQKTRNLKPGFELFSRGYSTQASSPIKKTNHNFA LSFSQFYSEIKESESKSKVSSNCYFAGAQLQIPWLNENILSSASLGYAYSHNCVKTKNQNTNTLSQGYFQGHTLGSELCC MLPESKISNLQFRPFIKALGIHAIQENFTETGMHIRSFQTKDPLINVTLPVGIYCYTEHVVNLKTIWEMQLAYSPTIYRQ KPKITTTRLISKGTWITSGTPVDHHAVSILIKNTTTLLNTMSLSINYRGDFSKSTLCNFLNVTSEIKF >Mature_948_residues MYPYTYPFLCLISLSIFSQKLDCLAKEKEACSCHEITGTGLIWPRSNPYGIDQVLKRPTISVGNLHNQNSDIDITDKKYF CVNYQYYRGNGGAITARTLNITKNIGPIIFRENITNDNGGAIFSPNCNITYNKQECCFINNMANVMIETSDSRSGGAIKC SQLVISNNIGCCQFLNNTASLSGGAIAADNDINIANNYGAIVLGNNKCFKEKGQGGSIYSANCSITSNYAPINFINNQAG CAGAVYVTGTCKISHNSEIIKFLNNSSLNQTNDPPIRWNPGGGAIYCTSCSITNNPKGLIFQSNSSKRNAGAIYAQNLTI KDNGPILFINNSSTWGAAIQNYNGGRFYLSADSGDIVFKRNLSFKSSGSYRNALHSTANLNLQIGARQGHSVKFYDPIEN EHPSPEILIFNPENHHLGTVLFSGADVSPNNTNLESLRSKMRNTSKIAHGVLAVEDSAVLAIYKITQDEGTLRLGNGAVI TTTQSAGQPTTVGCTLAFTKLALNLPSILAKGAQAPKIWIYPSENGNRYTEDPNPTITLSGNLSLLNDDNEDPYDSLNLS RSISRIPFLYLCDTTTKKITVDDLNIEAINDQQHYGHQGVWSPYWEEYTTTTNPTSALTANTSHRILYADWTPTGYIPNP EYRGDLVANVLWQAAYNAISGLHNLTTPPPRASRIGIAGGGSGAYVSQKTRNLKPGFELFSRGYSTQASSPIKKTNHNFA LSFSQFYSEIKESESKSKVSSNCYFAGAQLQIPWLNENILSSASLGYAYSHNCVKTKNQNTNTLSQGYFQGHTLGSELCC MLPESKISNLQFRPFIKALGIHAIQENFTETGMHIRSFQTKDPLINVTLPVGIYCYTEHVVNLKTIWEMQLAYSPTIYRQ KPKITTTRLISKGTWITSGTPVDHHAVSILIKNTTTLLNTMSLSINYRGDFSKSTLCNFLNVTSEIKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 104050; Mature: 104050
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYPYTYPFLCLISLSIFSQKLDCLAKEKEACSCHEITGTGLIWPRSNPYGIDQVLKRPTI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCHHHHHCCCCE SVGNLHNQNSDIDITDKKYFCVNYQYYRGNGGAITARTLNITKNIGPIIFRENITNDNGG EECCCCCCCCCEEEECCEEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEECCCCCCCC AIFSPNCNITYNKQECCFINNMANVMIETSDSRSGGAIKCSQLVISNNIGCCQFLNNTAS EEECCCCCEEECCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEEECCCCCEEECCCCCC LSGGAIAADNDINIANNYGAIVLGNNKCFKEKGQGGSIYSANCSITSNYAPINFINNQAG CCCCEEEECCCEEEECCCCEEEECCCCEECCCCCCCCEEECCCEEECCCCCEEEECCCCC CAGAVYVTGTCKISHNSEIIKFLNNSSLNQTNDPPIRWNPGGGAIYCTSCSITNNPKGLI CEEEEEEEEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCCEEE FQSNSSKRNAGAIYAQNLTIKDNGPILFINNSSTWGAAIQNYNGGRFYLSADSGDIVFKR EECCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCEEECCCCCEEEEEECCCCEEEEE NLSFKSSGSYRNALHSTANLNLQIGARQGHSVKFYDPIENEHPSPEILIFNPENHHLGTV CCCCCCCCCHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEE LFSGADVSPNNTNLESLRSKMRNTSKIAHGVLAVEDSAVLAIYKITQDEGTLRLGNGAVI EEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEECCCCCEEECCCEEE TTTQSAGQPTTVGCTLAFTKLALNLPSILAKGAQAPKIWIYPSENGNRYTEDPNPTITLS EEECCCCCCCEEEEEEEEHHHHHCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEEE GNLSLLNDDNEDPYDSLNLSRSISRIPFLYLCDTTTKKITVDDLNIEAINDQQHYGHQGV CCEEEECCCCCCCCHHCCHHHHHHHCCEEEEECCCCCEEEEECCEEEEECCHHHCCCCCC WSPYWEEYTTTTNPTSALTANTSHRILYADWTPTGYIPNPEYRGDLVANVLWQAAYNAIS CCCHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH GLHNLTTPPPRASRIGIAGGGSGAYVSQKTRNLKPGFELFSRGYSTQASSPIKKTNHNFA HHHCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCEE LSFSQFYSEIKESESKSKVSSNCYFAGAQLQIPWLNENILSSASLGYAYSHNCVKTKNQN EEHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHCCCCCCEEEECCEEECCCCC TNTLSQGYFQGHTLGSELCCMLPESKISNLQFRPFIKALGIHAIQENFTETGMHIRSFQT CCCHHCCCCCCCCCCCHHEEECCCHHHCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEECC KDPLINVTLPVGIYCYTEHVVNLKTIWEMQLAYSPTIYRQKPKITTTRLISKGTWITSGT CCCEEEEEECCEEEEEEEEEEEEEEEEEEEEECCCEEEECCCCCCCEEEEECCCEEECCC PVDHHAVSILIKNTTTLLNTMSLSINYRGDFSKSTLCNFLNVTSEIKF CCCCEEEEEEEECCEEEEEEEEEEEEECCCCCHHHHHHHHCCHHHCCC >Mature Secondary Structure MYPYTYPFLCLISLSIFSQKLDCLAKEKEACSCHEITGTGLIWPRSNPYGIDQVLKRPTI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCHHHHHCCCCE SVGNLHNQNSDIDITDKKYFCVNYQYYRGNGGAITARTLNITKNIGPIIFRENITNDNGG EECCCCCCCCCEEEECCEEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEECCCCCCCC AIFSPNCNITYNKQECCFINNMANVMIETSDSRSGGAIKCSQLVISNNIGCCQFLNNTAS EEECCCCCEEECCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEEECCCCCEEECCCCCC LSGGAIAADNDINIANNYGAIVLGNNKCFKEKGQGGSIYSANCSITSNYAPINFINNQAG CCCCEEEECCCEEEECCCCEEEECCCCEECCCCCCCCEEECCCEEECCCCCEEEECCCCC CAGAVYVTGTCKISHNSEIIKFLNNSSLNQTNDPPIRWNPGGGAIYCTSCSITNNPKGLI CEEEEEEEEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCCEEE FQSNSSKRNAGAIYAQNLTIKDNGPILFINNSSTWGAAIQNYNGGRFYLSADSGDIVFKR EECCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCEEECCCCCEEEEEECCCCEEEEE NLSFKSSGSYRNALHSTANLNLQIGARQGHSVKFYDPIENEHPSPEILIFNPENHHLGTV CCCCCCCCCHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEE LFSGADVSPNNTNLESLRSKMRNTSKIAHGVLAVEDSAVLAIYKITQDEGTLRLGNGAVI EEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEECCCCCEEECCCEEE TTTQSAGQPTTVGCTLAFTKLALNLPSILAKGAQAPKIWIYPSENGNRYTEDPNPTITLS EEECCCCCCCEEEEEEEEHHHHHCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEEE GNLSLLNDDNEDPYDSLNLSRSISRIPFLYLCDTTTKKITVDDLNIEAINDQQHYGHQGV CCEEEECCCCCCCCHHCCHHHHHHHCCEEEEECCCCCEEEEECCEEEEECCHHHCCCCCC WSPYWEEYTTTTNPTSALTANTSHRILYADWTPTGYIPNPEYRGDLVANVLWQAAYNAIS CCCHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH GLHNLTTPPPRASRIGIAGGGSGAYVSQKTRNLKPGFELFSRGYSTQASSPIKKTNHNFA HHHCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCEE LSFSQFYSEIKESESKSKVSSNCYFAGAQLQIPWLNENILSSASLGYAYSHNCVKTKNQN EEHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCHHHCCCCCCEEEECCEEECCCCC TNTLSQGYFQGHTLGSELCCMLPESKISNLQFRPFIKALGIHAIQENFTETGMHIRSFQT CCCHHCCCCCCCCCCCHHEEECCCHHHCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEECC KDPLINVTLPVGIYCYTEHVVNLKTIWEMQLAYSPTIYRQKPKITTTRLISKGTWITSGT CCCEEEEEECCEEEEEEEEEEEEEEEEEEEEECCCEEEECCCCCCCEEEEECCCEEECCC PVDHHAVSILIKNTTTLLNTMSLSINYRGDFSKSTLCNFLNVTSEIKF CCCCEEEEEEEECCEEEEEEEEEEEEECCCCCHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]