Click here to switch to the map view.

The map label for this gene is pmp15 [H]

Identifier: 89898540

GI number: 89898540

Start: 862471

End: 864459

Strand: Direct

Name: pmp15 [H]

Synonym: CF0733

Alternate gene names: 89898540

Gene position: 862471-864459 (Clockwise)

Preceding gene: 89898539

Following gene: 89898541

Centisome position: 73.95

GC content: 42.43

Gene sequence:

>1989_bases
ATGCTTCCGAAGTCTTTGTGTTATTCTTTTGTCGGATTCTTATGTGCTAGTCATGTTCTTTCCTATGGAAAAGAGCACTG
GATATCTCCACTAGATATTCCCATACAATTGCCCAAGATTCCTACAGATTTTACAACCCCGGAATCTTCAGATACCCCAT
GTGGGTTAACACATAATCCCAGACATGATTTCGTTCTAATCCGGGATAAACAAACAAAAACATTTACATACCAATCAAAC
GCTGACAACGGCGGAGCGGTTACCTGTAAATCTTTTAATCTTACTAAAAATAAGAAACCAATTTTTTTCGGAGAAAATAA
AACCGCTCGAAACGGTGGGGCCATTTTTTCTACAGAAAATGTCGCGATAGAGAAAAACTTTCGCGTGATTTTTTATCAAA
ATAGTGCCATTAGCCCAGGCTCTTCCAATCAAAACAATCTGGGAGGAGCTATCTCTGCAACAAACTTTGTAGCCTCTTTC
AATGATAACGAAGTAAATTTCACTTCTAATATAGCTATACAATCTGGTGGAGCGATCTACTCCTCAGGCTCTTGCAGGCT
CTGCGATAATTCTGCCTCTCTACTCTTTGACAATAATCAAACGGTTAACATGAATGGTGGTGGTGGAGCCATTCACGCAC
CCACCCTTGAACTTTCAAATAATACAGGGACAATCCACTTTATCAACAATCAAAGCTCTGCAGGGGGGGCAATTTTTACC
CAAAGATCTACACGTATTACCGAGAATCACGCTCCTATCTTGTTTTTCTGCAACTCGGCTTATGGTACTACAGACAGAGG
AAACGGTGGCGTCATTAGTAGTCCCTCCATCGTTATAGAAAATAATACCCAACCCATTGTATTTGCTAGAAACTCTGCCC
CCCACGCTGGTGGAGCCCTGGCCTATACTCACTTAACCATACAAAACAACGGGCCTATCTATTTTTTAAATAATACCTCG
AGTTGGGGCGCCGTTTGTCGCGCACTAGAAAATGGCTCCACAACGATTTCTGCTGATTACGGAGACATAATTTTCAATAA
TAATGTTACTAGAGACCGGAGCGGAGAAACACGGTCTTCTATGTTTTTTCACGAAAATCACTCTCTATCTCTCGGGGCAA
CCTCTAAACACAAAGTCTGCCTGTTTGGCATCATACACTCCCCCAGTTCCTTTACGATTAATCCCGAAGCCAAACATACG
GGTGCTGTTGTATTTTCAGCAAAACACATCCCGCATAATTTAGTTAACAATCTTAGATGTATCCAAACTGACTATCCCAA
TACTCTTGCTATTCAACACGGCACTCTATCTATAGAAAGTGGAGCGCGTCTCGCAGCATATAAACTGACTATGGAGCAAG
ATACACACCTGTGCTTAGGAAACAATGCTGTTATTAGAACTCTACAAAAAAGTAATTCCGCTAAAGATAGTAACTTACAA
ATCAAAAACATAGCCATTCTTCTGCCGGAAATATTACAGGACAATGTTCAAACGCCCAAAATCTGGATCTATCCCGAAAG
CAATAATACAGAAAATACCCTGGCTAAAATTTCCCTATCCGGCACTCTATCTCTATGGGATGAAAACTATAGCGATCCCT
ATGACAGTATAGACCTATCCGCCCCTATGAATAAAGTGCCTCTGCTATATCTTTCTGAAACAAACGCAAATAAAATTACT
ACAGATCAGTTCGATATCGCATCCATCAATGCGGGGAAACATTATGGACATCAAGGAACCTGGTCTCCCTATTGGGAAGA
GTTCTCAACACAAACAAAAACAAATCCGGTAGAGGCTGTTAACACCAAACACCGCTACCTCTATGCTGACTGGAGACCCT
CAGGATACAGTGTCAATCCCCAACACCGCAATGACCTCCTCCCCAATACTCTCTGGCAAACTGCTTTCCTCGCTTCATCA
ATAGCAAGGCCCCCCCCCCCAAGGGGGAGGGAAAACCCCTACATAGCGGCTTACTGGGAAGCGGCTTAG

Upstream 100 bases:

>100_bases
GTTCTATACTTTCTCTCTGCCTATGTGCGCCTAAACTCTAGACAAAGATACAAGAATTATTTATAGGATCGGCAAGTCAT
ATCCTTACTATTTTTTAGAT

Downstream 100 bases:

>100_bases
GTTTCCACACGCATCAAAAAAGTAAACAGGACCTCCACGGATTCTCTTCCAGAGCTTTCGGATACAGCACGCAAAGCCTA
CTTTCTTCAGAAACTCACCA

Product: polymorphic outer membrane protein

Products: NA

Alternate protein names: Polymorphic membrane protein 15 [H]

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MLPKSLCYSFVGFLCASHVLSYGKEHWISPLDIPIQLPKIPTDFTTPESSDTPCGLTHNPRHDFVLIRDKQTKTFTYQSN
ADNGGAVTCKSFNLTKNKKPIFFGENKTARNGGAIFSTENVAIEKNFRVIFYQNSAISPGSSNQNNLGGAISATNFVASF
NDNEVNFTSNIAIQSGGAIYSSGSCRLCDNSASLLFDNNQTVNMNGGGGAIHAPTLELSNNTGTIHFINNQSSAGGAIFT
QRSTRITENHAPILFFCNSAYGTTDRGNGGVISSPSIVIENNTQPIVFARNSAPHAGGALAYTHLTIQNNGPIYFLNNTS
SWGAVCRALENGSTTISADYGDIIFNNNVTRDRSGETRSSMFFHENHSLSLGATSKHKVCLFGIIHSPSSFTINPEAKHT
GAVVFSAKHIPHNLVNNLRCIQTDYPNTLAIQHGTLSIESGARLAAYKLTMEQDTHLCLGNNAVIRTLQKSNSAKDSNLQ
IKNIAILLPEILQDNVQTPKIWIYPESNNTENTLAKISLSGTLSLWDENYSDPYDSIDLSAPMNKVPLLYLSETNANKIT
TDQFDIASINAGKHYGHQGTWSPYWEEFSTQTKTNPVEAVNTKHRYLYADWRPSGYSVNPQHRNDLLPNTLWQTAFLASS
IARPPPPRGRENPYIAAYWEAA

Sequences:

>Translated_662_residues
MLPKSLCYSFVGFLCASHVLSYGKEHWISPLDIPIQLPKIPTDFTTPESSDTPCGLTHNPRHDFVLIRDKQTKTFTYQSN
ADNGGAVTCKSFNLTKNKKPIFFGENKTARNGGAIFSTENVAIEKNFRVIFYQNSAISPGSSNQNNLGGAISATNFVASF
NDNEVNFTSNIAIQSGGAIYSSGSCRLCDNSASLLFDNNQTVNMNGGGGAIHAPTLELSNNTGTIHFINNQSSAGGAIFT
QRSTRITENHAPILFFCNSAYGTTDRGNGGVISSPSIVIENNTQPIVFARNSAPHAGGALAYTHLTIQNNGPIYFLNNTS
SWGAVCRALENGSTTISADYGDIIFNNNVTRDRSGETRSSMFFHENHSLSLGATSKHKVCLFGIIHSPSSFTINPEAKHT
GAVVFSAKHIPHNLVNNLRCIQTDYPNTLAIQHGTLSIESGARLAAYKLTMEQDTHLCLGNNAVIRTLQKSNSAKDSNLQ
IKNIAILLPEILQDNVQTPKIWIYPESNNTENTLAKISLSGTLSLWDENYSDPYDSIDLSAPMNKVPLLYLSETNANKIT
TDQFDIASINAGKHYGHQGTWSPYWEEFSTQTKTNPVEAVNTKHRYLYADWRPSGYSVNPQHRNDLLPNTLWQTAFLASS
IARPPPPRGRENPYIAAYWEAA
>Mature_662_residues
MLPKSLCYSFVGFLCASHVLSYGKEHWISPLDIPIQLPKIPTDFTTPESSDTPCGLTHNPRHDFVLIRDKQTKTFTYQSN
ADNGGAVTCKSFNLTKNKKPIFFGENKTARNGGAIFSTENVAIEKNFRVIFYQNSAISPGSSNQNNLGGAISATNFVASF
NDNEVNFTSNIAIQSGGAIYSSGSCRLCDNSASLLFDNNQTVNMNGGGGAIHAPTLELSNNTGTIHFINNQSSAGGAIFT
QRSTRITENHAPILFFCNSAYGTTDRGNGGVISSPSIVIENNTQPIVFARNSAPHAGGALAYTHLTIQNNGPIYFLNNTS
SWGAVCRALENGSTTISADYGDIIFNNNVTRDRSGETRSSMFFHENHSLSLGATSKHKVCLFGIIHSPSSFTINPEAKHT
GAVVFSAKHIPHNLVNNLRCIQTDYPNTLAIQHGTLSIESGARLAAYKLTMEQDTHLCLGNNAVIRTLQKSNSAKDSNLQ
IKNIAILLPEILQDNVQTPKIWIYPESNNTENTLAKISLSGTLSLWDENYSDPYDSIDLSAPMNKVPLLYLSETNANKIT
TDQFDIASINAGKHYGHQGTWSPYWEEFSTQTKTNPVEAVNTKHRYLYADWRPSGYSVNPQHRNDLLPNTLWQTAFLASS
IARPPPPRGRENPYIAAYWEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 72464; Mature: 72464

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKSLCYSFVGFLCASHVLSYGKEHWISPLDIPIQLPKIPTDFTTPESSDTPCGLTHNP
CCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
RHDFVLIRDKQTKTFTYQSNADNGGAVTCKSFNLTKNKKPIFFGENKTARNGGAIFSTEN
CCCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEECC
VAIEKNFRVIFYQNSAISPGSSNQNNLGGAISATNFVASFNDNEVNFTSNIAIQSGGAIY
EEEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCEEE
SSGSCRLCDNSASLLFDNNQTVNMNGGGGAIHAPTLELSNNTGTIHFINNQSSAGGAIFT
ECCCEEEECCCCEEEEECCCEEEECCCCCEEECCEEEECCCCCEEEEECCCCCCCCEEEE
QRSTRITENHAPILFFCNSAYGTTDRGNGGVISSPSIVIENNTQPIVFARNSAPHAGGAL
ECCCEEECCCCCEEEEECCCCCCCCCCCCCEECCCEEEEECCCCEEEEEECCCCCCCCEE
AYTHLTIQNNGPIYFLNNTSSWGAVCRALENGSTTISADYGDIIFNNNVTRDRSGETRSS
EEEEEEEECCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCHHE
MFFHENHSLSLGATSKHKVCLFGIIHSPSSFTINPEAKHTGAVVFSAKHIPHNLVNNLRC
EEEECCCCEEECCCCCCCEEEEEEEECCCCEEECCCCCCCCEEEEEECCCCHHHHCCEEE
IQTDYPNTLAIQHGTLSIESGARLAAYKLTMEQDTHLCLGNNAVIRTLQKSNSAKDSNLQ
EECCCCCEEEEEECEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEHHCCCCCCCCEE
IKNIAILLPEILQDNVQTPKIWIYPESNNTENTLAKISLSGTLSLWDENYSDPYDSIDLS
EEEEEEEEHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCEECC
APMNKVPLLYLSETNANKITTDQFDIASINAGKHYGHQGTWSPYWEEFSTQTKTNPVEAV
CCCCCCCEEEEECCCCCCEECCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHCC
NTKHRYLYADWRPSGYSVNPQHRNDLLPNTLWQTAFLASSIARPPPPRGRENPYIAAYWE
CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE
AA
CC
>Mature Secondary Structure
MLPKSLCYSFVGFLCASHVLSYGKEHWISPLDIPIQLPKIPTDFTTPESSDTPCGLTHNP
CCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
RHDFVLIRDKQTKTFTYQSNADNGGAVTCKSFNLTKNKKPIFFGENKTARNGGAIFSTEN
CCCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEECC
VAIEKNFRVIFYQNSAISPGSSNQNNLGGAISATNFVASFNDNEVNFTSNIAIQSGGAIY
EEEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCEEE
SSGSCRLCDNSASLLFDNNQTVNMNGGGGAIHAPTLELSNNTGTIHFINNQSSAGGAIFT
ECCCEEEECCCCEEEEECCCEEEECCCCCEEECCEEEECCCCCEEEEECCCCCCCCEEEE
QRSTRITENHAPILFFCNSAYGTTDRGNGGVISSPSIVIENNTQPIVFARNSAPHAGGAL
ECCCEEECCCCCEEEEECCCCCCCCCCCCCEECCCEEEEECCCCEEEEEECCCCCCCCEE
AYTHLTIQNNGPIYFLNNTSSWGAVCRALENGSTTISADYGDIIFNNNVTRDRSGETRSS
EEEEEEEECCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCHHE
MFFHENHSLSLGATSKHKVCLFGIIHSPSSFTINPEAKHTGAVVFSAKHIPHNLVNNLRC
EEEECCCCEEECCCCCCCEEEEEEEECCCCEEECCCCCCCCEEEEEECCCCHHHHCCEEE
IQTDYPNTLAIQHGTLSIESGARLAAYKLTMEQDTHLCLGNNAVIRTLQKSNSAKDSNLQ
EECCCCCEEEEEECEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEHHCCCCCCCCEE
IKNIAILLPEILQDNVQTPKIWIYPESNNTENTLAKISLSGTLSLWDENYSDPYDSIDLS
EEEEEEEEHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCEECC
APMNKVPLLYLSETNANKITTDQFDIASINAGKHYGHQGTWSPYWEEFSTQTKTNPVEAV
CCCCCCCEEEEECCCCCCEECCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHCC
NTKHRYLYADWRPSGYSVNPQHRNDLLPNTLWQTAFLASSIARPPPPRGRENPYIAAYWE
CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]