Click here to switch to the map view.

The map label for this gene is ydaO [H]

Identifier: 89898294

GI number: 89898294

Start: 572849

End: 573592

Strand: Direct

Name: ydaO [H]

Synonym: CF0487

Alternate gene names: 89898294

Gene position: 572849-573592 (Clockwise)

Preceding gene: 89898289

Following gene: 89898295

Centisome position: 49.12

GC content: 39.11

Gene sequence:

>744_bases
ATGTCTATTTTACATTTACACCCCCCTTGGATTAAATCTGGTAAACGTATAGAAAGTTTGGTTCGTAAGGCTTTGTATAC
GTATTGCATGTTGGAAAATCATACTAAGATTGTCGTAGCTCTTAGCGGAGGGAAGGACAGTCTTACTTTGCTTTTAATGC
TCAAGGCTATTTCTGGGAGAGGATTTCCAGAACTTGATCTTTATGCTGTGAATATTGGGGGAAAGTATTCTTGTGGATCA
GAGGTTAGCCAGAAATATTTAGCCAATATTTGTGATAAAATTCAGGTCCCCTTCACTTCTATTGCCTCCCCCTATTCTCC
TGAGGTTCCTGAATGCTATTCTTGTTCTCAAGTTAGAAGACGCTTATTATTTCAGGCGGCGAAAGAAGTAGGAGCCTCAG
CCGTAGCTTTTGGACATCATCGTGATGATGTCGTACAAACAGCTTTAATGAATCTCTTGCATAAAGCTGAATTTGCAGGG
ATGTTACCTGTTTTAGGCATGGTACATTTCGATATCACTATCTTACGTCCTTTAATTCTTACCCCCGAATCGTGGATACG
TAAATTCTCAAAAGAAAGTGGTTTTGCTCGTGTTACCTGTCGTTGTCCAGTTGTATCTTTGAGAACAAAAACGGAAGCGG
CATTGAAATCATTAGAAGAAGTTTTTCCTCAAGCTAGACATAACATTGCTCTTGCTATAGAACAGCATGGATTGTCAAAA
GCTCAAAAAACAAAAGCTAGTTAA

Upstream 100 bases:

>100_bases
AAGGAAAGTTTAAATAAGCTGGAGATAAAAACCAATTACAAGTTTTTCGACAAACTAAGATTGTATTGCCAGCTTTGTTC
CATCCTTTTACTATTCTTTC

Downstream 100 bases:

>100_bases
ACATGTTTTTTTTATGGATAAAAAATAAAAACTAGTTGAATGTTCTTTTCATGGATTAACCTCGCTTTTTTTTAATTATG
GTGATGTTTGTTTTTTTGGT

Product: PP-loop type ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSILHLHPPWIKSGKRIESLVRKALYTYCMLENHTKIVVALSGGKDSLTLLLMLKAISGRGFPELDLYAVNIGGKYSCGS
EVSQKYLANICDKIQVPFTSIASPYSPEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLHKAEFAG
MLPVLGMVHFDITILRPLILTPESWIRKFSKESGFARVTCRCPVVSLRTKTEAALKSLEEVFPQARHNIALAIEQHGLSK
AQKTKAS

Sequences:

>Translated_247_residues
MSILHLHPPWIKSGKRIESLVRKALYTYCMLENHTKIVVALSGGKDSLTLLLMLKAISGRGFPELDLYAVNIGGKYSCGS
EVSQKYLANICDKIQVPFTSIASPYSPEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLHKAEFAG
MLPVLGMVHFDITILRPLILTPESWIRKFSKESGFARVTCRCPVVSLRTKTEAALKSLEEVFPQARHNIALAIEQHGLSK
AQKTKAS
>Mature_246_residues
SILHLHPPWIKSGKRIESLVRKALYTYCMLENHTKIVVALSGGKDSLTLLLMLKAISGRGFPELDLYAVNIGGKYSCGSE
VSQKYLANICDKIQVPFTSIASPYSPEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLHKAEFAGM
LPVLGMVHFDITILRPLILTPESWIRKFSKESGFARVTCRCPVVSLRTKTEAALKSLEEVFPQARHNIALAIEQHGLSKA
QKTKAS

Specific function: Required for the thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32) [H]

COG id: COG0037

COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TtcA family [H]

Homologues:

Organism=Escherichia coli, GI1787606, Length=191, Percent_Identity=31.9371727748691, Blast_Score=103, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012089
- InterPro:   IPR014729
- InterPro:   IPR011063 [H]

Pfam domain/function: PF01171 ATP_bind_3 [H]

EC number: NA

Molecular weight: Translated: 27351; Mature: 27220

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILHLHPPWIKSGKRIESLVRKALYTYCMLENHTKIVVALSGGKDSLTLLLMLKAISGR
CCEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCC
GFPELDLYAVNIGGKYSCGSEVSQKYLANICDKIQVPFTSIASPYSPEVPECYSCSQVRR
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHH
RLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLHKAEFAGMLPVLGMVHFDITILRPLIL
HHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPESWIRKFSKESGFARVTCRCPVVSLRTKTEAALKSLEEVFPQARHNIALAIEQHGLSK
CCHHHHHHHHHCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCHH
AQKTKAS
HHHCCCC
>Mature Secondary Structure 
SILHLHPPWIKSGKRIESLVRKALYTYCMLENHTKIVVALSGGKDSLTLLLMLKAISGR
CEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCC
GFPELDLYAVNIGGKYSCGSEVSQKYLANICDKIQVPFTSIASPYSPEVPECYSCSQVRR
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHH
RLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLHKAEFAGMLPVLGMVHFDITILRPLIL
HHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPESWIRKFSKESGFARVTCRCPVVSLRTKTEAALKSLEEVFPQARHNIALAIEQHGLSK
CCHHHHHHHHHCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCHH
AQKTKAS
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA